Variant report

Variant	rs61665044
Chromosome Location	chr11:76628505-76628506
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76621301..76624414-chr11:76626664..76629602,3	K562	blood:
2	chr11:76573371..76575582-chr11:76628469..76631182,2	MCF-7	breast:
3	chr11:76493335..76495613-chr11:76628217..76631203,2	MCF-7	breast:
4	chr11:76627984..76630110-chr11:76852373..76855072,2	K562	blood:

Variant related genes	Relation type
ENSG00000182704	Chromatin interaction
ENSG00000255100	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55703321	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55704636	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56350632	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56366003	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56690742	1.00[AMR][1000 genomes]
rs57689898	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59296116	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59877692	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60501442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61000315	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61056520	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61086262	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7113632	1.00[AMR][1000 genomes]
rs73493631	1.00[AMR][1000 genomes]
rs7941242	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7942088	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7942185	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9804531	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76597000-76631000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:76613600-76631200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:76615600-76631200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:76617800-76630000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr11:76617800-76630000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:76618200-76637600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:76618600-76629800	Weak transcription	A549	lung
8	chr11:76618600-76630000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr11:76622600-76630000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:76622600-76631200	Weak transcription	Spleen	Spleen
11	chr11:76622800-76629600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:76622800-76631200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:76623000-76630000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:76623400-76629200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:76624200-76629000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:76626600-76631200	Weak transcription	Esophagus	oesophagus
17	chr11:76627000-76629400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:76627400-76631600	Enhancers	K562	blood
19	chr11:76627800-76630000	Weak transcription	Primary T cells from cord blood	blood
20	chr11:76628000-76630000	Weak transcription	Liver	Liver
21	chr11:76628000-76637600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:76628200-76629800	Weak transcription	Brain Anterior Caudate	brain
23	chr11:76628200-76630000	Weak transcription	Stomach Mucosa	stomach
24	chr11:76628400-76630800	Weak transcription	Fetal Intestine Small	intestine
25	chr11:76628400-76630800	Weak transcription	HepG2	liver

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