Variant report

Variant	rs73493631
Chromosome Location	chr11:76796222-76796223
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55703321	1.00[AMR][1000 genomes]
rs55704636	1.00[AMR][1000 genomes]
rs56350632	1.00[AMR][1000 genomes]
rs56366003	1.00[AMR][1000 genomes]
rs56690742	1.00[AMR][1000 genomes]
rs57689898	1.00[AMR][1000 genomes]
rs59296116	1.00[AMR][1000 genomes]
rs59877692	1.00[AMR][1000 genomes]
rs60501442	1.00[AMR][1000 genomes]
rs61000315	1.00[AMR][1000 genomes]
rs61056520	1.00[AMR][1000 genomes]
rs61086262	1.00[AMR][1000 genomes]
rs61665044	1.00[AMR][1000 genomes]
rs7113632	1.00[AMR][1000 genomes]
rs7941242	1.00[AMR][1000 genomes]
rs7942088	1.00[AMR][1000 genomes]
rs7942185	1.00[AMR][1000 genomes]
rs9804531	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76778600-76818800	Weak transcription	Aorta	Aorta
2	chr11:76786200-76799000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:76789200-76796600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:76790800-76804600	Enhancers	Liver	Liver
5	chr11:76791200-76797000	Enhancers	Stomach Mucosa	stomach
6	chr11:76791400-76796600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr11:76791800-76797800	Genic enhancers	Fetal Intestine Large	intestine
8	chr11:76792400-76802800	Genic enhancers	Fetal Intestine Small	intestine
9	chr11:76792600-76800600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr11:76792600-76819200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:76793800-76799400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:76793800-76801800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:76793800-76804000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:76794000-76796800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:76794000-76797200	Genic enhancers	Rectal Mucosa Donor 29	rectum
16	chr11:76794000-76797800	Genic enhancers	Rectal Mucosa Donor 31	rectum
17	chr11:76794000-76802000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:76794200-76797400	Weak transcription	Brain Substantia Nigra	brain
19	chr11:76794200-76797600	Strong transcription	Fetal Brain Female	brain
20	chr11:76794200-76815600	Weak transcription	Osteobl	bone
21	chr11:76794400-76796800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr11:76794400-76797000	Weak transcription	Ovary	ovary
23	chr11:76794400-76797200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr11:76794400-76797600	Genic enhancers	Colonic Mucosa	Colon
25	chr11:76794400-76799000	Weak transcription	NHDF-Ad	bronchial
26	chr11:76794400-76801800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr11:76794400-76802400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:76794400-76811800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:76794400-76816800	Weak transcription	HSMM	muscle
30	chr11:76794400-76817400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:76794400-76817400	Weak transcription	NHLF	lung
32	chr11:76794600-76797000	Weak transcription	Brain Anterior Caudate	brain
33	chr11:76794600-76797200	Genic enhancers	Duodenum Mucosa	Duodenum
34	chr11:76794600-76797200	Weak transcription	GM12878-XiMat	blood
35	chr11:76794600-76797400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:76794600-76797600	Weak transcription	Dnd41	blood
37	chr11:76794600-76799000	Weak transcription	Small Intestine	intestine
38	chr11:76794600-76799600	Weak transcription	Fetal Lung	lung
39	chr11:76794600-76808400	Strong transcription	Fetal Stomach	stomach
40	chr11:76794600-76809600	Weak transcription	Thymus	Thymus
41	chr11:76794600-76810200	Weak transcription	Colon Smooth Muscle	Colon
42	chr11:76794600-76829200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:76794800-76797000	Weak transcription	Primary T cells from cord blood	blood
44	chr11:76794800-76797000	Weak transcription	Brain Hippocampus Middle	brain
45	chr11:76794800-76797400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr11:76794800-76797400	Weak transcription	Esophagus	oesophagus
47	chr11:76794800-76797400	Weak transcription	Right Atrium	heart
48	chr11:76794800-76801800	Strong transcription	Stomach Smooth Muscle	stomach
49	chr11:76794800-76802600	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr11:76794800-76804200	Weak transcription	Lung	lung

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