Variant report
| Variant | rs60527029 |
|---|---|
| Chromosome Location | chr1:213482361-213482362 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:213481532..213483343-chr1:213555774..213557940,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1187794 | 0.98[ASN][1000 genomes] |
| rs1187803 | 0.93[ASN][1000 genomes] |
| rs1655982 | 0.87[ASN][1000 genomes] |
| rs1699185 | 0.89[ASN][1000 genomes] |
| rs17020474 | 0.91[ASN][1000 genomes] |
| rs17020538 | 1.00[EUR][1000 genomes] |
| rs17020563 | 1.00[EUR][1000 genomes] |
| rs17020578 | 1.00[EUR][1000 genomes] |
| rs57128359 | 1.00[EUR][1000 genomes] |
| rs57521169 | 1.00[EUR][1000 genomes] |
| rs58506138 | 1.00[EUR][1000 genomes] |
| rs61313554 | 1.00[EUR][1000 genomes] |
| rs61409769 | 1.00[EUR][1000 genomes] |
| rs73091926 | 1.00[EUR][1000 genomes] |
| rs73091929 | 1.00[EUR][1000 genomes] |
| rs73091934 | 1.00[EUR][1000 genomes] |
| rs73091935 | 1.00[EUR][1000 genomes] |
| rs73091936 | 1.00[EUR][1000 genomes] |
| rs73091939 | 1.00[EUR][1000 genomes] |
| rs73091941 | 1.00[EUR][1000 genomes] |
| rs73097985 | 1.00[EUR][1000 genomes] |
| rs74142123 | 1.00[EUR][1000 genomes] |
| rs7512222 | 1.00[EUR][1000 genomes] |
| rs892692 | 1.00[EUR][1000 genomes] |
| rs892693 | 1.00[EUR][1000 genomes] |
| rs892694 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3392967 | chr1:213271844-213490132 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:213474800-213487400 | Weak transcription | Right Atrium | heart |
