Variant report

Variant	rs60582580
Chromosome Location	chr5:145062444-145062445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs3919655	1.00[AMR][1000 genomes]
rs58220113	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs59140948	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs59384625	0.83[AMR][1000 genomes]
rs73302025	0.91[AMR][1000 genomes]
rs73302027	0.91[AMR][1000 genomes]
rs73302037	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73302045	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145060400-145062600	Enhancers	Adipose Nuclei	Adipose
2	chr5:145060400-145062600	Enhancers	Osteobl	bone
3	chr5:145060800-145074600	Weak transcription	Aorta	Aorta
4	chr5:145060800-145089600	Weak transcription	Gastric	stomach
5	chr5:145061000-145062600	Enhancers	Colon Smooth Muscle	Colon
6	chr5:145061400-145076800	Weak transcription	Pancreas	Pancrea
7	chr5:145062000-145063000	Weak transcription	K562	blood
8	chr5:145062000-145069200	Weak transcription	HepG2	liver
9	chr5:145062400-145071800	Weak transcription	Rectal Smooth Muscle	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links