Variant report

Variant	rs59384625
Chromosome Location	chr5:145060181-145060182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10052169	1.00[ASN][1000 genomes]
rs3919655	0.83[AMR][1000 genomes]
rs60582580	0.83[AMR][1000 genomes]
rs73302025	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73302027	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73302037	0.83[AMR][1000 genomes]
rs73302045	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145028400-145060400	Weak transcription	Pancreas	Pancrea
2	chr5:145053200-145060400	Weak transcription	Left Ventricle	heart
3	chr5:145057800-145060200	Weak transcription	Stomach Mucosa	stomach
4	chr5:145058800-145061000	Weak transcription	Fetal Intestine Small	intestine
5	chr5:145059000-145060600	Weak transcription	Fetal Intestine Large	intestine
6	chr5:145059600-145060600	Enhancers	Colon Smooth Muscle	Colon
7	chr5:145059800-145062400	Enhancers	Rectal Smooth Muscle	rectum
8	chr5:145060000-145061200	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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