Variant report

Variant	rs6058712
Chromosome Location	chr20:29816499-29816500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4911210	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6059231	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7274098	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:54 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3342568	chr20:29803909-29834289	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
2	esv3362807	chr20:29803909-29834289	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
3	esv3392375	chr20:29803909-29834289	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv3412704	chr20:29803909-29834289	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
5	esv3445374	chr20:29803909-29834289	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
6	esv3451819	chr20:29803909-29834389	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv964448	chr20:29803909-29857200	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv10142	chr20:29804062-29833443	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv585879	chr20:29804208-29816499	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
10	nsv585880	chr20:29804208-29819916	ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv585881	chr20:29804208-29820738	ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv585882	chr20:29804208-29822325	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv585883	chr20:29804208-29823205	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
14	nsv585884	chr20:29804208-29828120	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
15	nsv585885	chr20:29804208-29830347	Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
16	nsv585886	chr20:29804208-29832022	ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
17	nsv585887	chr20:29804208-29833609	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
18	nsv585888	chr20:29804208-29844859	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
19	nsv585891	chr20:29804293-29816499	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
20	esv1841241	chr20:29804293-29819916	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
21	nsv585892	chr20:29804293-29819916	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
22	nsv585893	chr20:29804293-29828120	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
23	nsv585894	chr20:29804293-29830347	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
24	esv1805772	chr20:29804293-29832022	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
25	esv1814224	chr20:29804293-29832022	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
26	esv1819293	chr20:29804293-29832022	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
27	esv1838661	chr20:29804293-29832022	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
28	nsv585895	chr20:29804293-29832022	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
29	esv1800744	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
30	esv1806005	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
31	esv1809844	chr20:29804293-29860684	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
32	esv1821656	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
33	esv1829940	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
34	esv1836734	chr20:29804293-29860684	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
35	esv1839077	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
36	esv1850349	chr20:29804293-29860684	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
37	esv994391	chr20:29804598-29832573	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
38	nsv585896	chr20:29805100-29816499	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
39	nsv585897	chr20:29805100-29824391	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
40	nsv585898	chr20:29805100-29830347	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
41	nsv585899	chr20:29805100-29832022	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
42	nsv585900	chr20:29805820-29832022	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
43	esv2485082	chr20:29806791-29833789	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
44	nsv585901	chr20:29807419-29822325	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
45	nsv585902	chr20:29810691-29830347	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
46	nsv585903	chr20:29810691-29832022	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
47	nsv585904	chr20:29811652-29820738	Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
48	nsv585905	chr20:29811652-29822325	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
49	nsv585906	chr20:29811652-29823205	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
50	nsv585907	chr20:29814380-29830347	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:29803800-29818600	ZNF genes & repeats	Brain Angular Gyrus	brain
2	chr20:29803800-29833200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr20:29803800-29833200	ZNF genes & repeats	Primary T cells from cord blood	blood
4	chr20:29803800-29833200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
5	chr20:29803800-29833200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
6	chr20:29803800-29833200	ZNF genes & repeats	Brain Hippocampus Middle	brain
7	chr20:29803800-29833200	ZNF genes & repeats	Fetal Kidney	kidney
8	chr20:29803800-29833200	ZNF genes & repeats	Fetal Lung	lung
9	chr20:29803800-29833200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
10	chr20:29803800-29833400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
11	chr20:29803800-29833400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr20:29803800-29833400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr20:29803800-29833400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
14	chr20:29803800-29833400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
15	chr20:29803800-29833400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
16	chr20:29803800-29833400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
17	chr20:29803800-29833400	ZNF genes & repeats	Adipose Nuclei	Adipose
18	chr20:29803800-29833400	ZNF genes & repeats	Liver	Liver
19	chr20:29803800-29833400	ZNF genes & repeats	Brain Substantia Nigra	brain
20	chr20:29803800-29833400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
21	chr20:29803800-29833400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
22	chr20:29803800-29833400	ZNF genes & repeats	Gastric	stomach
23	chr20:29803800-29833400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
24	chr20:29803800-29833400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
25	chr20:29803800-29833400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
26	chr20:29803800-29833600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
27	chr20:29803800-29833600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
28	chr20:29803800-29833800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
29	chr20:29804000-29833200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
30	chr20:29804000-29833200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
31	chr20:29804000-29833200	ZNF genes & repeats	Dnd41	blood
32	chr20:29804000-29833400	ZNF genes & repeats	Brain Anterior Caudate	brain
33	chr20:29804000-29833400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
34	chr20:29804000-29833400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
35	chr20:29804000-29833400	ZNF genes & repeats	Fetal Brain Male	brain
36	chr20:29804000-29833400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
37	chr20:29804000-29833600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
38	chr20:29804200-29833400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
39	chr20:29804400-29833000	ZNF genes & repeats	HepG2	liver
40	chr20:29804400-29833200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
41	chr20:29804400-29833400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
42	chr20:29804600-29829800	ZNF genes & repeats	Primary B cells from cord blood	blood
43	chr20:29808000-29818600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
44	chr20:29808200-29822000	ZNF genes & repeats	Colon Smooth Muscle	Colon
45	chr20:29808400-29833200	ZNF genes & repeats	K562	blood
46	chr20:29811800-29818600	ZNF genes & repeats	Colonic Mucosa	Colon
47	chr20:29811800-29833200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
48	chr20:29811800-29833200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
49	chr20:29812000-29826000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr20:29812000-29833200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood

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