Variant report
| Variant | rs60619771 |
|---|---|
| Chromosome Location | chr6:128880664-128880665 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:128839509..128841677-chr6:128878813..128880838,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000152894 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs493326 | 1.00[AMR][1000 genomes] |
| rs507794 | 1.00[AMR][1000 genomes] |
| rs57459959 | 1.00[AMR][1000 genomes] |
| rs59787071 | 1.00[AMR][1000 genomes] |
| rs61077968 | 1.00[AMR][1000 genomes] |
| rs6917178 | 1.00[AMR][1000 genomes] |
| rs6938192 | 1.00[AMR][1000 genomes] |
| rs73772029 | 1.00[AMR][1000 genomes] |
| rs73772030 | 1.00[AMR][1000 genomes] |
| rs73772031 | 1.00[AMR][1000 genomes] |
| rs73772032 | 1.00[AMR][1000 genomes] |
| rs73772033 | 1.00[AMR][1000 genomes] |
| rs73772037 | 1.00[AMR][1000 genomes] |
| rs73772040 | 1.00[AMR][1000 genomes] |
| rs73772057 | 1.00[AMR][1000 genomes] |
| rs73772061 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73772062 | 1.00[AMR][1000 genomes] |
| rs73772063 | 1.00[AMR][1000 genomes] |
| rs73772064 | 1.00[AMR][1000 genomes] |
| rs73772076 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033443 | chr6:128306654-128899203 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv538440 | chr6:128306654-128899203 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv1020071 | chr6:128579774-129048919 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 4 | nsv538441 | chr6:128579774-129048919 | Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 5 | nsv830801 | chr6:128878436-129064667 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:128879000-128881600 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 2 | chr6:128879000-128882000 | Weak transcription | Fetal Heart | heart |
