Variant report

Variant	rs61077968
Chromosome Location	chr6:128780396-128780397
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128778610..128780659-chr6:128782620..128784185,2	MCF-7	breast:
2	chr6:128773075..128776512-chr6:128778434..128782134,3	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs57459959	1.00[AMR][1000 genomes]
rs58039418	1.00[AMR][1000 genomes]
rs59787071	1.00[AMR][1000 genomes]
rs60619771	1.00[AMR][1000 genomes]
rs6917178	1.00[AMR][1000 genomes]
rs6938192	1.00[AMR][1000 genomes]
rs73772024	1.00[AMR][1000 genomes]
rs73772025	1.00[AMR][1000 genomes]
rs73772029	1.00[AMR][1000 genomes]
rs73772030	1.00[AMR][1000 genomes]
rs73772031	1.00[AMR][1000 genomes]
rs73772032	1.00[AMR][1000 genomes]
rs73772033	1.00[AMR][1000 genomes]
rs73772037	1.00[AMR][1000 genomes]
rs73772040	1.00[AMR][1000 genomes]
rs73772057	1.00[AMR][1000 genomes]
rs73772061	1.00[AMR][1000 genomes]
rs73772062	1.00[AMR][1000 genomes]
rs73772063	1.00[AMR][1000 genomes]
rs73772064	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv830800	chr6:128710631-128878435	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128759800-128786800	Weak transcription	Left Ventricle	heart
2	chr6:128767800-128785200	Weak transcription	NHEK	skin
3	chr6:128768200-128785000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:128773400-128795200	Weak transcription	HSMMtube	muscle
5	chr6:128774600-128786800	Weak transcription	Right Ventricle	heart
6	chr6:128775200-128785800	Weak transcription	Ovary	ovary
7	chr6:128775400-128781000	Weak transcription	Pancreas	Pancrea
8	chr6:128775400-128785000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:128777200-128785000	Weak transcription	Osteobl	bone
10	chr6:128777800-128782800	Weak transcription	Fetal Lung	lung
11	chr6:128777800-128786800	Weak transcription	Stomach Mucosa	stomach
12	chr6:128778000-128786800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:128778200-128781200	Weak transcription	Fetal Intestine Small	intestine
14	chr6:128778200-128782400	Weak transcription	Liver	Liver
15	chr6:128778200-128786200	Weak transcription	Fetal Intestine Large	intestine
16	chr6:128778400-128780800	Enhancers	Brain Hippocampus Middle	brain
17	chr6:128778800-128790600	Weak transcription	Fetal Heart	heart
18	chr6:128779400-128785400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr6:128779400-128785400	Weak transcription	HepG2	liver
20	chr6:128779800-128784200	Weak transcription	NHLF	lung
21	chr6:128780000-128782600	Weak transcription	Brain Anterior Caudate	brain
22	chr6:128780200-128781000	Weak transcription	Brain Substantia Nigra	brain
23	chr6:128780200-128786000	Weak transcription	Brain Angular Gyrus	brain

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