Variant report

Variant	rs73772040
Chromosome Location	chr6:128812977-128812978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128810906..128814817-chr6:128838628..128842024,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152894	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs507794	1.00[AMR][1000 genomes]
rs57459959	1.00[AMR][1000 genomes]
rs58039418	1.00[AMR][1000 genomes]
rs59787071	1.00[AMR][1000 genomes]
rs60619771	1.00[AMR][1000 genomes]
rs61077968	1.00[AMR][1000 genomes]
rs6917178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938192	1.00[AMR][1000 genomes]
rs73772024	1.00[AMR][1000 genomes]
rs73772025	1.00[AMR][1000 genomes]
rs73772029	1.00[AMR][1000 genomes]
rs73772030	1.00[AMR][1000 genomes]
rs73772031	1.00[AMR][1000 genomes]
rs73772032	1.00[AMR][1000 genomes]
rs73772033	1.00[AMR][1000 genomes]
rs73772037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772057	1.00[AMR][1000 genomes]
rs73772061	1.00[AMR][1000 genomes]
rs73772062	1.00[AMR][1000 genomes]
rs73772063	1.00[AMR][1000 genomes]
rs73772064	1.00[AMR][1000 genomes]
rs73772076	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv830800	chr6:128710631-128878435	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128797400-128822000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:128808800-128830800	Weak transcription	Lung	lung
3	chr6:128811000-128814400	Enhancers	Small Intestine	intestine
4	chr6:128811400-128813400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:128811400-128813400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:128811400-128813800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:128811600-128813200	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr6:128811600-128814000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:128811800-128813400	Active TSS	Ovary	ovary
10	chr6:128811800-128813600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:128811800-128816600	Weak transcription	Gastric	stomach
12	chr6:128812000-128813200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:128812000-128814200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:128812000-128814200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:128812000-128817000	Genic enhancers	HepG2	liver
16	chr6:128812200-128813200	Active TSS	Brain Anterior Caudate	brain
17	chr6:128812200-128813200	Active TSS	Right Atrium	heart
18	chr6:128812200-128813400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr6:128812200-128813400	Flanking Active TSS	HUVEC	blood vessel
20	chr6:128812200-128813600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:128812200-128813600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr6:128812200-128813600	Flanking Active TSS	HMEC	breast
23	chr6:128812200-128814000	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr6:128812200-128814200	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr6:128812200-128815000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:128812200-128817200	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr6:128812400-128813000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:128812400-128813000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:128812400-128813000	Active TSS	HSMMtube	muscle
30	chr6:128812400-128813200	Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr6:128812400-128813200	Active TSS	Brain Angular Gyrus	brain
32	chr6:128812400-128813200	Active TSS	Brain Hippocampus Middle	brain
33	chr6:128812400-128813200	Active TSS	Brain Inferior Temporal Lobe	brain
34	chr6:128812400-128813200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr6:128812400-128813400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:128812400-128813400	Active TSS	Adipose Nuclei	Adipose
37	chr6:128812400-128813600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:128812400-128813600	Flanking Active TSS	Duodenum Mucosa	Duodenum
39	chr6:128812400-128814200	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr6:128812600-128813000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr6:128812600-128813000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:128812600-128813000	Enhancers	Fetal Heart	heart
43	chr6:128812600-128813000	Active TSS	Fetal Intestine Large	intestine
44	chr6:128812600-128813000	Active TSS	Fetal Muscle Trunk	muscle
45	chr6:128812600-128813000	Enhancers	Fetal Thymus	thymus
46	chr6:128812600-128813000	Flanking Active TSS	Psoas Muscle	Psoas
47	chr6:128812600-128813000	Active TSS	Stomach Mucosa	stomach
48	chr6:128812600-128813200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr6:128812600-128813200	Active TSS	Brain Substantia Nigra	brain
50	chr6:128812600-128813200	Active TSS	Fetal Adrenal Gland	Adrenal Gland

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