Variant report

Variant	rs60630803
Chromosome Location	chr7:127077506-127077507
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127030926..127033308-chr7:127074785..127077650,3	K562	blood:

Variant related genes	Relation type
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10230771	0.97[ASN][1000 genomes]
rs10243114	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10243337	0.81[ASN][1000 genomes]
rs10243876	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10269088	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10279764	0.97[ASN][1000 genomes]
rs10808228	0.97[ASN][1000 genomes]
rs10954150	0.97[ASN][1000 genomes]
rs11772370	0.88[ASN][1000 genomes]
rs12706789	0.97[ASN][1000 genomes]
rs12706790	0.97[ASN][1000 genomes]
rs1419404	0.88[ASN][1000 genomes]
rs17150883	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867129	0.85[ASN][1000 genomes]
rs17867253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1833067	0.97[ASN][1000 genomes]
rs2157749	0.97[ASN][1000 genomes]
rs28557454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731360	0.97[ASN][1000 genomes]
rs4731361	0.97[ASN][1000 genomes]
rs4731362	0.97[ASN][1000 genomes]
rs55850145	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60267009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60908730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6963225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808943	0.97[ASN][1000 genomes]
rs7809156	0.97[ASN][1000 genomes]
rs7809187	0.97[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127077200-127078000	Enhancers	Osteobl	bone
2	chr7:127077200-127078600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:127077400-127078200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr7:127077400-127078400	Weak transcription	Placenta	Placenta
5	chr7:127077400-127078600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:127077400-127078600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:127077400-127078600	Enhancers	NH-A	brain
8	chr7:127077400-127079000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:127077400-127079200	Enhancers	HSMMtube	muscle
10	chr7:127077400-127079400	Enhancers	NHLF	lung
11	chr7:127077400-127079800	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links