Variant report

Variant	rs10269088
Chromosome Location	chr7:127078490-127078491
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10230771	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10243114	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10243337	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10243876	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10279764	0.97[ASN][1000 genomes]
rs10808228	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10954150	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11772370	0.88[ASN][1000 genomes]
rs12706789	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12706790	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1419404	0.88[ASN][1000 genomes]
rs17150883	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17864185	1.00[JPT][hapmap]
rs17864189	1.00[JPT][hapmap]
rs17865997	1.00[JPT][hapmap]
rs17867037	1.00[JPT][hapmap]
rs17867065	1.00[JPT][hapmap]
rs17867129	0.85[ASN][1000 genomes]
rs17867253	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867809	1.00[JPT][hapmap]
rs17869261	1.00[JPT][hapmap]
rs17869284	1.00[JPT][hapmap]
rs1833067	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2157749	0.97[ASN][1000 genomes]
rs28557454	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731360	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4731361	0.97[ASN][1000 genomes]
rs4731362	0.97[ASN][1000 genomes]
rs55850145	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60267009	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60630803	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60908730	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942979	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6963225	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808943	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7809156	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7809187	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127077200-127078600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:127077400-127078600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:127077400-127078600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:127077400-127078600	Enhancers	NH-A	brain
5	chr7:127077400-127079000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:127077400-127079200	Enhancers	HSMMtube	muscle
7	chr7:127077400-127079400	Enhancers	NHLF	lung
8	chr7:127077400-127079800	Enhancers	HSMM	muscle
9	chr7:127077600-127078600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:127077600-127078600	Enhancers	HMEC	breast
11	chr7:127077600-127078600	Enhancers	NHDF-Ad	bronchial
12	chr7:127078000-127078600	Flanking Active TSS	Osteobl	bone
13	chr7:127078200-127078600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr7:127078200-127078600	Enhancers	A549	lung
15	chr7:127078200-127078600	Enhancers	Hela-S3	cervix
16	chr7:127078400-127078600	Enhancers	Placenta	Placenta
17	chr7:127078400-127078800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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