Variant report

Variant	rs60631598
Chromosome Location	chr6:14807193-14807194
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12111225	1.00[AFR][1000 genomes]
rs57432869	1.00[AFR][1000 genomes]
rs61347117	1.00[AFR][1000 genomes]
rs6902021	1.00[AFR][1000 genomes]
rs6903995	1.00[AFR][1000 genomes]
rs6926816	0.88[AFR][1000 genomes]
rs6934655	1.00[AFR][1000 genomes]
rs7756274	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14802400-14807400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:14802600-14807400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:14805400-14807200	Weak transcription	Fetal Lung	lung
4	chr6:14805400-14819000	Weak transcription	Right Atrium	heart
5	chr6:14805600-14808800	Weak transcription	Fetal Heart	heart
6	chr6:14805600-14809200	Weak transcription	Stomach Mucosa	stomach
7	chr6:14806200-14807400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:14806400-14807200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:14806400-14818800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:14807000-14808000	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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