Variant report

Variant	rs61347117
Chromosome Location	chr6:14842702-14842703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12111225	1.00[AFR][1000 genomes]
rs57432869	1.00[AFR][1000 genomes]
rs60631598	1.00[AFR][1000 genomes]
rs6902021	1.00[AFR][1000 genomes]
rs6903995	1.00[AFR][1000 genomes]
rs6926816	0.88[AFR][1000 genomes]
rs6934655	1.00[AFR][1000 genomes]
rs7756274	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1017572	chr6:14830510-14906933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv601005	chr6:14840563-14845799	Weak transcription Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14832200-14855400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:14839600-14844800	Weak transcription	Ovary	ovary
3	chr6:14839600-14849400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:14840600-14843800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:14841800-14842800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr6:14841800-14843200	Enhancers	Placenta	Placenta
7	chr6:14842000-14842800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:14842000-14843000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:14842000-14844000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:14842000-14844000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:14842000-14844800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:14842200-14842800	Enhancers	NH-A	brain
13	chr6:14842200-14843000	Enhancers	Hela-S3	cervix
14	chr6:14842200-14843200	Enhancers	Colon Smooth Muscle	Colon
15	chr6:14842200-14843200	Enhancers	Fetal Stomach	stomach
16	chr6:14842400-14842800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:14842400-14842800	Enhancers	Rectal Smooth Muscle	rectum
18	chr6:14842400-14844000	Enhancers	NHDF-Ad	bronchial
19	chr6:14842600-14842800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:14842600-14842800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:14842600-14842800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:14842600-14842800	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr6:14842600-14843000	Enhancers	Osteobl	bone
24	chr6:14842600-14843200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:14842600-14843200	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links