Variant report
| Variant | rs60656521 |
|---|---|
| Chromosome Location | chr12:29267236-29267237 |
| allele | A/C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10843325 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12819686 | 1.00[AMR][1000 genomes] |
| rs12820515 | 1.00[AMR][1000 genomes] |
| rs12831837 | 1.00[AMR][1000 genomes] |
| rs34170651 | 1.00[AMR][1000 genomes] |
| rs34572599 | 1.00[AMR][1000 genomes] |
| rs34624113 | 1.00[AMR][1000 genomes] |
| rs34690032 | 1.00[AMR][1000 genomes] |
| rs34879577 | 1.00[AMR][1000 genomes] |
| rs35039649 | 1.00[AMR][1000 genomes] |
| rs35447364 | 1.00[AMR][1000 genomes] |
| rs35708989 | 1.00[AMR][1000 genomes] |
| rs55710291 | 1.00[AMR][1000 genomes] |
| rs55880276 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56269416 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57106561 | 1.00[AMR][1000 genomes] |
| rs59663308 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6487777 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs71453725 | 1.00[AMR][1000 genomes] |
| rs74076456 | 1.00[AMR][1000 genomes] |
| rs74076489 | 1.00[AMR][1000 genomes] |
| rs74076501 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74077035 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532233 | chr12:29009388-29496179 | Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv995123 | chr12:29095272-29571558 | Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
| 3 | esv2758301 | chr12:29110782-29289849 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | esv2759888 | chr12:29110782-29289849 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv972977 | chr12:29259810-29276403 | Weak transcription Enhancers ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:29265800-29267800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr12:29266400-29286400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
