Variant report

Variant	rs74076456
Chromosome Location	chr12:29224837-29224838
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10843325	1.00[AMR][1000 genomes]
rs12305958	0.90[AFR][1000 genomes]
rs12315255	0.93[AFR][1000 genomes]
rs12319491	0.93[AFR][1000 genomes]
rs12819686	1.00[AMR][1000 genomes]
rs12820515	1.00[AMR][1000 genomes]
rs12831837	1.00[AMR][1000 genomes]
rs34170651	1.00[AMR][1000 genomes]
rs34572599	1.00[AMR][1000 genomes]
rs34624113	1.00[AMR][1000 genomes]
rs34690032	1.00[AMR][1000 genomes]
rs34879577	1.00[AMR][1000 genomes]
rs35039649	1.00[AMR][1000 genomes]
rs35447364	1.00[AMR][1000 genomes]
rs35708989	1.00[AMR][1000 genomes]
rs55710291	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55880276	1.00[AMR][1000 genomes]
rs56235020	0.93[AFR][1000 genomes]
rs56269416	1.00[AMR][1000 genomes]
rs57106561	1.00[AMR][1000 genomes]
rs59663308	1.00[AMR][1000 genomes]
rs59858313	0.87[AFR][1000 genomes]
rs60656521	1.00[AMR][1000 genomes]
rs6487777	1.00[AMR][1000 genomes]
rs71453725	1.00[AMR][1000 genomes]
rs73063783	0.90[AFR][1000 genomes]
rs73065614	0.93[AFR][1000 genomes]
rs74076489	1.00[AMR][1000 genomes]
rs74076501	1.00[AMR][1000 genomes]
rs74077035	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532233	chr12:29009388-29496179	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2758301	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759888	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv519276	chr12:29210121-29226080	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv557914	chr12:29210121-29226080	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29220600-29228200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:29221800-29225600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:29221800-29227000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:29222400-29225800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr12:29222600-29226800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr12:29222800-29225400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr12:29222800-29226800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr12:29222800-29227000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr12:29223800-29227200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr12:29224200-29226000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr12:29224200-29226600	Enhancers	NHDF-Ad	bronchial
12	chr12:29224400-29226000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr12:29224400-29226600	Weak transcription	Brain Anterior Caudate	brain
14	chr12:29224400-29228000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr12:29224600-29227200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr12:29224800-29225000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr12:29224800-29225200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr12:29224800-29225200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr12:29224800-29228200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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