Variant report

Variant	rs60670564
Chromosome Location	chr1:90816276-90816277
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs60952964	1.00[AMR][1000 genomes]
rs61679040	1.00[AMR][1000 genomes]
rs74099435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74099460	1.00[AFR][1000 genomes]
rs74099465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74099615	1.00[AMR][1000 genomes]
rs74099616	1.00[AMR][1000 genomes]
rs74099618	1.00[AMR][1000 genomes]
rs74102623	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102624	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102625	1.00[AMR][1000 genomes]
rs74102626	1.00[AMR][1000 genomes]
rs74102627	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102628	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102629	1.00[AMR][1000 genomes]
rs74102630	1.00[AMR][1000 genomes]
rs74102631	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102632	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102633	1.00[AMR][1000 genomes]
rs74102637	1.00[AMR][1000 genomes]
rs74102638	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102641	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102643	1.00[AMR][1000 genomes]
rs74102647	1.00[AMR][1000 genomes]
rs74102648	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524317	chr1:90729744-90836739	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv521123	chr1:90770566-90836739	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv870546	chr1:90783440-90816579	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1000787	chr1:90809476-90874481	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3394726	chr1:90811671-91019675	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90815000-90816400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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