Variant report

Variant	rs74102633
Chromosome Location	chr1:90841649-90841650
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:90840392..90842007-chr1:90922500..90924019,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs60670564	1.00[AMR][1000 genomes]
rs60952964	1.00[AMR][1000 genomes]
rs61679040	1.00[AMR][1000 genomes]
rs74099435	1.00[AMR][1000 genomes]
rs74099465	1.00[AMR][1000 genomes]
rs74099615	1.00[AMR][1000 genomes]
rs74099616	1.00[AMR][1000 genomes]
rs74099618	1.00[AMR][1000 genomes]
rs74102623	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102624	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102625	1.00[AMR][1000 genomes]
rs74102626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102627	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102628	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102629	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102631	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102632	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102637	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102638	1.00[AMR][1000 genomes]
rs74102641	1.00[AMR][1000 genomes]
rs74102643	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102647	1.00[AMR][1000 genomes]
rs74102648	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000787	chr1:90809476-90874481	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3394726	chr1:90811671-91019675	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1801569	chr1:90819992-90983299	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv1808806	chr1:90819992-90983299	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv1822918	chr1:90819992-90983299	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv1850863	chr1:90819992-90983299	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2757740	chr1:90819992-90983299	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv2758949	chr1:90819992-90983299	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv427697	chr1:90819992-90983299	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv428124	chr1:90819992-90983299	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	esv1811797	chr1:90819992-91008105	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv432487	chr1:90824652-90931765	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90840600-90842000	Enhancers	Dnd41	blood

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