Variant report

Variant	rs61679040
Chromosome Location	chr1:90851808-90851809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs60670564	1.00[AMR][1000 genomes]
rs60952964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74099435	1.00[AMR][1000 genomes]
rs74099465	1.00[AMR][1000 genomes]
rs74099615	1.00[AMR][1000 genomes]
rs74099616	1.00[AMR][1000 genomes]
rs74099618	1.00[AMR][1000 genomes]
rs74102623	1.00[AMR][1000 genomes]
rs74102624	1.00[AMR][1000 genomes]
rs74102625	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102626	1.00[AMR][1000 genomes]
rs74102627	1.00[AMR][1000 genomes]
rs74102628	1.00[AMR][1000 genomes]
rs74102629	1.00[AMR][1000 genomes]
rs74102630	1.00[AMR][1000 genomes]
rs74102631	1.00[AMR][1000 genomes]
rs74102632	1.00[AMR][1000 genomes]
rs74102633	1.00[AMR][1000 genomes]
rs74102637	1.00[AMR][1000 genomes]
rs74102638	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102641	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102643	1.00[AMR][1000 genomes]
rs74102647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000787	chr1:90809476-90874481	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3394726	chr1:90811671-91019675	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1801569	chr1:90819992-90983299	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv1808806	chr1:90819992-90983299	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv1822918	chr1:90819992-90983299	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv1850863	chr1:90819992-90983299	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2757740	chr1:90819992-90983299	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv2758949	chr1:90819992-90983299	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv427697	chr1:90819992-90983299	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv428124	chr1:90819992-90983299	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	esv1811797	chr1:90819992-91008105	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv432487	chr1:90824652-90931765	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90844000-90853000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:90850200-90853200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:90850800-90853000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:90851600-90853800	Enhancers	Osteobl	bone
5	chr1:90851600-90854400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:90851800-90854000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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