Variant report

Variant	rs60719574
Chromosome Location	chr14:105827355-105827356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11847153	0.83[AMR][1000 genomes]
rs11847295	1.00[AMR][1000 genomes]
rs12101178	0.83[AMR][1000 genomes]
rs28589825	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73357398	1.00[AMR][1000 genomes]
rs73357401	1.00[EUR][1000 genomes]
rs73359013	1.00[AMR][1000 genomes]
rs73359029	1.00[EUR][1000 genomes]
rs73359058	1.00[AMR][1000 genomes]
rs73359059	1.00[AMR][1000 genomes]
rs73359061	1.00[AMR][1000 genomes]
rs73359066	1.00[AMR][1000 genomes]
rs73359072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090510	1.00[EUR][1000 genomes]
rs74090528	1.00[EUR][1000 genomes]
rs8021520	1.00[AMR][1000 genomes]
rs8021663	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9671890	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105797000-105849200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr14:105799800-105830800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr14:105804600-105829800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr14:105807400-105830800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr14:105807400-105833600	Weak transcription	Aorta	Aorta
6	chr14:105808600-105848600	Weak transcription	HSMMtube	muscle
7	chr14:105809800-105830200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr14:105809800-105830400	Weak transcription	Fetal Lung	lung
9	chr14:105810000-105833800	Weak transcription	Colon Smooth Muscle	Colon
10	chr14:105812600-105829600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr14:105813400-105828000	Strong transcription	Fetal Intestine Small	intestine
12	chr14:105813800-105828400	Strong transcription	Fetal Stomach	stomach
13	chr14:105814200-105848600	Weak transcription	Left Ventricle	heart
14	chr14:105816400-105831000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr14:105818600-105830200	Weak transcription	Osteobl	bone
16	chr14:105818600-105830400	Weak transcription	Fetal Thymus	thymus
17	chr14:105818600-105830800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr14:105818600-105846000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr14:105818800-105829200	Weak transcription	HUVEC	blood vessel
20	chr14:105818800-105830200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr14:105818800-105830400	Weak transcription	K562	blood
22	chr14:105818800-105830800	Weak transcription	Primary B cells from cord blood	blood
23	chr14:105818800-105831000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr14:105818800-105831000	Weak transcription	Fetal Heart	heart
25	chr14:105818800-105831000	Weak transcription	Stomach Mucosa	stomach
26	chr14:105818800-105831000	Weak transcription	NHEK	skin
27	chr14:105818800-105833600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr14:105818800-105849200	Weak transcription	A549	lung
29	chr14:105819400-105830200	Weak transcription	Primary B cells from peripheral blood	blood
30	chr14:105819600-105827400	Strong transcription	Lung	lung
31	chr14:105820000-105828000	Strong transcription	Stomach Smooth Muscle	stomach
32	chr14:105820000-105831000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr14:105820200-105827800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr14:105820600-105831000	Weak transcription	Small Intestine	intestine
35	chr14:105821000-105827600	Strong transcription	Duodenum Mucosa	Duodenum
36	chr14:105821000-105827600	Strong transcription	Ovary	ovary
37	chr14:105821800-105842600	Weak transcription	Fetal Brain Male	brain
38	chr14:105822000-105830400	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr14:105822000-105830400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr14:105822000-105848800	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr14:105822200-105830400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr14:105822200-105831000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr14:105822400-105830200	Weak transcription	NHLF	lung
44	chr14:105822600-105830400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr14:105822600-105830400	Weak transcription	Thymus	Thymus
46	chr14:105822800-105830200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr14:105822800-105830400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr14:105822800-105833600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr14:105822800-105847800	Weak transcription	Liver	Liver
50	chr14:105823000-105831000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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