Variant report
| Variant | rs60727264 |
|---|---|
| Chromosome Location | chr4:107354572-107354573 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:107335618..107338970-chr4:107353446..107357718,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000222333 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs2230255 | 1.00[AMR][1000 genomes] |
| rs58384941 | 1.00[AMR][1000 genomes] |
| rs59418597 | 1.00[AMR][1000 genomes] |
| rs6814225 | 1.00[AMR][1000 genomes] |
| rs6845729 | 1.00[AMR][1000 genomes] |
| rs72878531 | 1.00[AMR][1000 genomes] |
| rs72878578 | 1.00[AMR][1000 genomes] |
| rs72883851 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72883878 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72883881 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72887222 | 1.00[AMR][1000 genomes] |
| rs72887236 | 1.00[AMR][1000 genomes] |
| rs72887237 | 1.00[AMR][1000 genomes] |
| rs72887247 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008963 | chr4:107282656-107384924 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
