Variant report

Variant	rs72883851
Chromosome Location	chr4:107335858-107335859
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2230255	1.00[AMR][1000 genomes]
rs58384941	1.00[AMR][1000 genomes]
rs59418597	1.00[AMR][1000 genomes]
rs60727264	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6814225	1.00[AMR][1000 genomes]
rs6845729	1.00[AMR][1000 genomes]
rs72878531	1.00[AMR][1000 genomes]
rs72878578	1.00[AMR][1000 genomes]
rs72883878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72883881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887222	1.00[AMR][1000 genomes]
rs72887236	1.00[AMR][1000 genomes]
rs72887237	1.00[AMR][1000 genomes]
rs72887247	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1008963	chr4:107282656-107384924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107332600-107339200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:107334800-107336200	Enhancers	NHDF-Ad	bronchial
3	chr4:107335000-107336000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:107335000-107336000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:107335400-107336000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr4:107335600-107336000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:107335600-107336000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:107335600-107336000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:107335600-107336000	Enhancers	HMEC	breast
10	chr4:107335600-107336200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:107335600-107336200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:107335600-107336200	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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