Variant report

Variant	rs72887237
Chromosome Location	chr4:107364709-107364710
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2230255	1.00[AMR][1000 genomes]
rs58384941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59418597	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60727264	1.00[AMR][1000 genomes]
rs6814225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6845729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72878531	1.00[AMR][1000 genomes]
rs72878578	1.00[AMR][1000 genomes]
rs72883851	1.00[AMR][1000 genomes]
rs72883878	1.00[AMR][1000 genomes]
rs72883881	1.00[AMR][1000 genomes]
rs72887222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72887247	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008963	chr4:107282656-107384924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107355400-107366000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:107364200-107365400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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