Variant report

Variant	rs60729703
Chromosome Location	chr3:24730483-24730484
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11923514	1.00[EUR][1000 genomes]
rs4449259	1.00[AMR][1000 genomes]
rs4858124	1.00[AMR][1000 genomes]
rs4858642	1.00[AMR][1000 genomes]
rs73145105	1.00[AMR][1000 genomes]
rs73145108	1.00[AMR][1000 genomes]
rs73145109	1.00[EUR][1000 genomes]
rs73145114	1.00[EUR][1000 genomes]
rs73145167	1.00[AMR][1000 genomes]
rs73145173	1.00[AMR][1000 genomes]
rs9310750	1.00[EUR][1000 genomes]
rs9310751	1.00[EUR][1000 genomes]
rs9847762	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757862	chr3:24652513-24942926	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759135	chr3:24652513-24942926	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1005314	chr3:24690692-24813960	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv589950	chr3:24694021-24816974	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2756981	chr3:24725003-24813960	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv967212	chr3:24725627-24759272	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24725400-24731400	Weak transcription	Aorta	Aorta
2	chr3:24726400-24730600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:24727400-24730600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:24728400-24730800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:24729400-24730600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr3:24729400-24731000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr3:24729600-24730600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:24729600-24730800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:24729600-24730800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:24729600-24731000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr3:24729800-24730800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr3:24729800-24730800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:24729800-24730800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr3:24729800-24730800	Enhancers	NH-A	brain
15	chr3:24730000-24730800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:24730000-24731200	Enhancers	Stomach Smooth Muscle	stomach
17	chr3:24730000-24731200	Enhancers	A549	lung
18	chr3:24730200-24730800	Enhancers	NHEK	skin
19	chr3:24730200-24731000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:24730400-24730600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:24730400-24730600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr3:24730400-24730600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:24730400-24730600	Enhancers	Psoas Muscle	Psoas
24	chr3:24730400-24730600	Enhancers	Rectal Smooth Muscle	rectum
25	chr3:24730400-24730600	Bivalent Enhancer	HSMMtube	muscle
26	chr3:24730400-24731000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:24730400-24731000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:24730400-24731000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:24730400-24732000	Enhancers	Skeletal Muscle Female	skeletal muscle

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