Variant report

Variant	rs9310750
Chromosome Location	chr3:24721888-24721889
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24562398..24564257-chr3:24720066..24722013,2	MCF-7	breast:
2	chr3:24534671..24539332-chr3:24720695..24724748,4	K562	blood:
3	chr3:24720021..24724614-chr3:24726069..24732040,5	K562	blood:
4	chr3:24719797..24722537-chr3:24723132..24725391,2	MCF-7	breast:
5	chr3:24535738..24537885-chr3:24721658..24723753,2	K562	blood:
6	chr3:24535862..24537903-chr3:24720521..24722059,2	MCF-7	breast:
7	chr3:24720510..24723447-chr3:24727587..24729885,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237838	Chromatin interaction
ENSG00000228791	Chromatin interaction
ENSG00000265028	Chromatin interaction
ENSG00000151090	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11923514	1.00[EUR][1000 genomes]
rs60729703	1.00[EUR][1000 genomes]
rs73145109	1.00[EUR][1000 genomes]
rs73145114	1.00[EUR][1000 genomes]
rs9310751	1.00[EUR][1000 genomes]
rs9847762	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757862	chr3:24652513-24942926	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759135	chr3:24652513-24942926	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1005314	chr3:24690692-24813960	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv589950	chr3:24694021-24816974	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24704200-24726000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:24719400-24722000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:24719400-24723200	Enhancers	Placenta Amnion	Placenta Amnion
4	chr3:24720200-24722000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:24720200-24723200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:24720200-24724600	Weak transcription	Liver	Liver
7	chr3:24720200-24724600	Weak transcription	NHLF	lung
8	chr3:24720200-24725000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr3:24720400-24724600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:24720400-24724600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:24720400-24724800	Weak transcription	Colon Smooth Muscle	Colon
12	chr3:24720400-24725000	Weak transcription	Hela-S3	cervix
13	chr3:24720600-24722200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:24720600-24724600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:24721200-24722400	Weak transcription	NHDF-Ad	bronchial
16	chr3:24721200-24723600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:24721400-24722600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:24721400-24723800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:24721400-24724600	Weak transcription	NHEK	skin
20	chr3:24721400-24724800	Weak transcription	HMEC	breast
21	chr3:24721400-24726000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:24721600-24722000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:24721800-24722000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr3:24721800-24725000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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