Variant report

Variant	rs9847762
Chromosome Location	chr3:24722944-24722945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24534671..24539332-chr3:24720695..24724748,4	K562	blood:
2	chr3:24720021..24724614-chr3:24726069..24732040,5	K562	blood:
3	chr3:24535738..24537885-chr3:24721658..24723753,2	K562	blood:
4	chr3:24720510..24723447-chr3:24727587..24729885,2	MCF-7	breast:
5	chr3:24534659..24537472-chr3:24722510..24724793,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151090	Chromatin interaction
ENSG00000237838	Chromatin interaction
ENSG00000228791	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11923514	1.00[EUR][1000 genomes]
rs60729703	1.00[EUR][1000 genomes]
rs73145109	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73145114	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73145150	1.00[AMR][1000 genomes]
rs9310750	1.00[EUR][1000 genomes]
rs9310751	0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9310752	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757862	chr3:24652513-24942926	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759135	chr3:24652513-24942926	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1005314	chr3:24690692-24813960	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv589950	chr3:24694021-24816974	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24704200-24726000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:24719400-24723200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr3:24720200-24723200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:24720200-24724600	Weak transcription	Liver	Liver
5	chr3:24720200-24724600	Weak transcription	NHLF	lung
6	chr3:24720200-24725000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:24720400-24724600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:24720400-24724600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:24720400-24724800	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:24720400-24725000	Weak transcription	Hela-S3	cervix
11	chr3:24720600-24724600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:24721200-24723600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr3:24721400-24723800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:24721400-24724600	Weak transcription	NHEK	skin
15	chr3:24721400-24724800	Weak transcription	HMEC	breast
16	chr3:24721400-24726000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:24721800-24725000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:24722000-24723400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:24722200-24724600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr3:24722200-24724600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:24722200-24726000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr3:24722400-24725400	Enhancers	NHDF-Ad	bronchial
23	chr3:24722600-24725400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links