Variant report
| Variant | rs6075039 |
|---|---|
| Chromosome Location | chr20:16241018-16241019 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1884604 | 1.00[JPT][hapmap] |
| rs1884605 | 1.00[JPT][hapmap] |
| rs1884606 | 1.00[JPT][hapmap] |
| rs2093004 | 1.00[JPT][hapmap] |
| rs2144883 | 1.00[JPT][hapmap] |
| rs2144887 | 1.00[JPT][hapmap] |
| rs2208059 | 1.00[JPT][hapmap] |
| rs2328017 | 1.00[JPT][hapmap] |
| rs2328018 | 1.00[JPT][hapmap] |
| rs2328019 | 1.00[JPT][hapmap] |
| rs4814469 | 1.00[JPT][hapmap] |
| rs4989145 | 1.00[ASN][1000 genomes] |
| rs6034438 | 1.00[JPT][hapmap] |
| rs6034439 | 1.00[JPT][hapmap] |
| rs6034447 | 1.00[JPT][hapmap] |
| rs6034460 | 1.00[JPT][hapmap] |
| rs6034461 | 1.00[JPT][hapmap] |
| rs6043852 | 1.00[JPT][hapmap] |
| rs6043854 | 1.00[JPT][hapmap] |
| rs6043858 | 1.00[JPT][hapmap] |
| rs6043870 | 1.00[JPT][hapmap] |
| rs6043879 | 1.00[JPT][hapmap] |
| rs6043881 | 1.00[JPT][hapmap] |
| rs6043882 | 1.00[JPT][hapmap] |
| rs6043887 | 1.00[JPT][hapmap] |
| rs6043892 | 1.00[JPT][hapmap] |
| rs6080243 | 1.00[JPT][hapmap] |
| rs73106399 | 1.00[ASN][1000 genomes] |
| rs73110315 | 1.00[ASN][1000 genomes] |
| rs8119246 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833930 | chr20:16134347-16302763 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv1813497 | chr20:16236495-16241018 | Enhancers Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv519621 | chr20:16236837-16248453 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv516591 | chr20:16238023-16248453 | ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | esv3343292 | chr20:16238552-16242750 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | esv3416688 | chr20:16239452-16241950 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:16240200-16242800 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 2 | chr20:16240400-16243400 | Weak transcription | Spleen | Spleen |
| 3 | chr20:16240600-16246200 | Weak transcription | Gastric | stomach |
