Variant report

Variant	rs60767511
Chromosome Location	chr9:98334443-98334444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs58657350	0.82[EUR][1000 genomes]
rs58781445	0.80[EUR][1000 genomes]
rs61218176	0.84[EUR][1000 genomes]
rs66563414	0.82[EUR][1000 genomes]
rs67761618	0.88[EUR][1000 genomes]
rs67862902	0.91[EUR][1000 genomes]
rs7038392	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7047169	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72621416	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72754349	0.90[EUR][1000 genomes]
rs7852976	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv831658	chr9:98152971-98342178	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv430083	chr9:98204245-98445645	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1041997	chr9:98322355-98442175	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv540176	chr9:98322355-98442175	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98330200-98335000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:98332600-98350000	Weak transcription	Right Atrium	heart
3	chr9:98333200-98334600	Weak transcription	Ovary	ovary
4	chr9:98333200-98334600	Weak transcription	NHDF-Ad	bronchial
5	chr9:98333400-98334800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:98333600-98334600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:98333800-98335000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:98333800-98336400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:98333800-98336400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:98333800-98337400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:98334400-98334600	Enhancers	Lung	lung
12	chr9:98334400-98335400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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