Variant report

Variant	rs67862902
Chromosome Location	chr9:98332944-98332945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98272232..98274861-chr9:98331837..98334312,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs58657350	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58781445	0.84[EUR][1000 genomes]
rs60767511	0.91[EUR][1000 genomes]
rs61218176	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66563414	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67761618	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7038392	0.90[EUR][1000 genomes]
rs7047169	0.90[EUR][1000 genomes]
rs72621416	0.93[EUR][1000 genomes]
rs72754349	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72754351	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7852976	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs928618	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv831658	chr9:98152971-98342178	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv430083	chr9:98204245-98445645	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1041997	chr9:98322355-98442175	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv540176	chr9:98322355-98442175	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv7061	chr9:98332712-98334159	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98330200-98335000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:98330800-98333000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:98331000-98333000	Weak transcription	Spleen	Spleen
4	chr9:98331200-98333800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:98332000-98333800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:98332200-98333000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr9:98332200-98333000	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr9:98332200-98333000	Enhancers	Fetal Kidney	kidney
9	chr9:98332200-98333000	Active TSS	Stomach Smooth Muscle	stomach
10	chr9:98332200-98333400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
11	chr9:98332200-98333400	Flanking Active TSS	HUVEC	blood vessel
12	chr9:98332200-98333600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr9:98332200-98333800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr9:98332400-98333000	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr9:98332400-98333200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:98332400-98333200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:98332400-98333200	Bivalent Enhancer	Fetal Thymus	thymus
18	chr9:98332400-98333200	Enhancers	Placenta Amnion	Placenta Amnion
19	chr9:98332400-98333400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
20	chr9:98332400-98333400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
21	chr9:98332400-98333400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:98332400-98333400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr9:98332400-98333400	Bivalent Enhancer	Fetal Muscle Leg	muscle
24	chr9:98332400-98333600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
25	chr9:98332400-98333800	Enhancers	H1 Cell Line	embryonic stem cell
26	chr9:98332400-98333800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr9:98332400-98333800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr9:98332400-98333800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:98332400-98333800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr9:98332400-98334000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr9:98332600-98333000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:98332600-98333000	Enhancers	Placenta	Placenta
33	chr9:98332600-98333000	Flanking Active TSS	NH-A	brain
34	chr9:98332600-98333200	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr9:98332600-98333200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr9:98332600-98333200	Enhancers	HSMMtube	muscle
37	chr9:98332600-98333200	Enhancers	Osteobl	bone
38	chr9:98332600-98333400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr9:98332600-98333400	Enhancers	Muscle Satellite Cultured Cells	--
40	chr9:98332600-98333400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr9:98332600-98333400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
42	chr9:98332600-98333400	Enhancers	Fetal Lung	lung
43	chr9:98332600-98333600	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr9:98332600-98333600	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr9:98332600-98333800	Bivalent Enhancer	Fetal Stomach	stomach
46	chr9:98332600-98350000	Weak transcription	Right Atrium	heart
47	chr9:98332800-98333000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr9:98332800-98333000	Enhancers	NHLF	lung
49	chr9:98332800-98333200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr9:98332800-98333200	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links