Variant report

Variant	rs67761618
Chromosome Location	chr9:98346512-98346513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs58657350	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58781445	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60767511	0.88[EUR][1000 genomes]
rs61218176	0.84[EUR][1000 genomes]
rs66563414	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67862902	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7038392	0.89[EUR][1000 genomes]
rs7047169	0.89[EUR][1000 genomes]
rs72621416	0.86[EUR][1000 genomes]
rs72754349	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72754351	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7852976	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs928618	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs928619	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430083	chr9:98204245-98445645	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1041997	chr9:98322355-98442175	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv540176	chr9:98322355-98442175	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98332600-98350000	Weak transcription	Right Atrium	heart
2	chr9:98343000-98347000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:98344600-98346600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:98344600-98346800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr9:98344800-98346800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr9:98345400-98346800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr9:98345400-98347000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:98345400-98347000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr9:98345400-98347200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr9:98345600-98347000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr9:98345800-98347400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr9:98346000-98346800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr9:98346000-98346800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:98346000-98347000	Enhancers	Fetal Stomach	stomach
15	chr9:98346200-98346800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:98346200-98347000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr9:98346200-98347000	Enhancers	Fetal Lung	lung
18	chr9:98346400-98346600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:98346400-98346600	Enhancers	Fetal Intestine Large	intestine
20	chr9:98346400-98346600	Enhancers	Fetal Kidney	kidney
21	chr9:98346400-98346800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr9:98346400-98346800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:98346400-98346800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:98346400-98346800	Enhancers	Ovary	ovary
25	chr9:98346400-98347000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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