Variant report

Variant	rs60782876
Chromosome Location	chr5:15835270-15835271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16867720	1.00[AMR][1000 genomes]
rs60563254	1.00[AMR][1000 genomes]
rs6897069	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752326	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752327	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752328	0.83[AFR][1000 genomes]
rs73752329	0.83[AFR][1000 genomes]
rs73752334	0.83[AFR][1000 genomes]
rs73752337	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1028089	chr5:15636285-15883910	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv537676	chr5:15636285-15883910	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1024248	chr5:15638067-15863583	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv537677	chr5:15638067-15863583	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
10	esv2763894	chr5:15714022-15863332	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1031483	chr5:15738485-15926083	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15822800-15836400	Enhancers	Fetal Heart	heart
2	chr5:15832200-15836600	Weak transcription	Left Ventricle	heart
3	chr5:15832200-15837000	Weak transcription	Fetal Stomach	stomach
4	chr5:15833000-15838200	Weak transcription	Right Ventricle	heart
5	chr5:15833600-15835400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:15833600-15836000	Enhancers	Colon Smooth Muscle	Colon
7	chr5:15833600-15836000	Enhancers	Stomach Mucosa	stomach
8	chr5:15833800-15840800	Weak transcription	Psoas Muscle	Psoas
9	chr5:15834000-15839000	Enhancers	Fetal Lung	lung
10	chr5:15834200-15835400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:15834200-15835800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr5:15834200-15836000	Enhancers	NH-A	brain
13	chr5:15834200-15836000	Enhancers	NHDF-Ad	bronchial
14	chr5:15834200-15836000	Enhancers	Osteobl	bone
15	chr5:15834200-15836400	Enhancers	NHLF	lung
16	chr5:15834200-15837200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:15834400-15835400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr5:15834400-15835400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr5:15834400-15836600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr5:15834600-15836000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:15834600-15836200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr5:15834600-15836200	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr5:15834600-15836400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr5:15834800-15835800	Enhancers	Fetal Kidney	kidney
25	chr5:15834800-15836000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr5:15834800-15836000	Enhancers	Ovary	ovary
27	chr5:15834800-15836000	Enhancers	HSMM	muscle
28	chr5:15834800-15836200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr5:15835000-15838600	Enhancers	HSMMtube	muscle
30	chr5:15835200-15835400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr5:15835200-15835400	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr5:15835200-15835400	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr5:15835200-15835600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr5:15835200-15835800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr5:15835200-15836200	Enhancers	HUVEC	blood vessel
36	chr5:15835200-15836400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr5:15835200-15838000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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