Variant report

Variant	rs73752337
Chromosome Location	chr5:15865275-15865276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs55704539	1.00[AMR][1000 genomes]
rs55762424	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55792048	1.00[AMR][1000 genomes]
rs55842606	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55900820	1.00[AMR][1000 genomes]
rs56804352	1.00[AMR][1000 genomes]
rs56917287	1.00[AMR][1000 genomes]
rs57018497	1.00[AMR][1000 genomes]
rs57456523	1.00[AMR][1000 genomes]
rs57789337	1.00[AMR][1000 genomes]
rs58172920	1.00[AMR][1000 genomes]
rs58451844	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58539280	1.00[AMR][1000 genomes]
rs58700467	1.00[AMR][1000 genomes]
rs59015531	1.00[AMR][1000 genomes]
rs60563254	0.83[AFR][1000 genomes]
rs60716264	0.83[AFR][1000 genomes]
rs60782876	0.83[AFR][1000 genomes]
rs60910436	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60964517	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61489070	1.00[AMR][1000 genomes]
rs61619084	1.00[AMR][1000 genomes]
rs6861989	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6888839	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6897069	0.83[AFR][1000 genomes]
rs73752326	0.81[AFR][1000 genomes]
rs73752327	0.91[AFR][1000 genomes]
rs73752328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752342	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752345	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752347	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752348	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752349	1.00[AMR][1000 genomes]
rs73752350	1.00[AMR][1000 genomes]
rs73752351	1.00[AMR][1000 genomes]
rs73752352	1.00[AMR][1000 genomes]
rs73752353	1.00[AMR][1000 genomes]
rs73752354	1.00[AMR][1000 genomes]
rs73752355	1.00[AMR][1000 genomes]
rs73752356	1.00[AMR][1000 genomes]
rs73752357	1.00[AMR][1000 genomes]
rs73752358	1.00[AMR][1000 genomes]
rs73752359	1.00[AMR][1000 genomes]
rs73752360	1.00[AMR][1000 genomes]
rs73752361	1.00[AMR][1000 genomes]
rs73752362	1.00[AMR][1000 genomes]
rs73752365	1.00[AMR][1000 genomes]
rs73752368	1.00[AMR][1000 genomes]
rs73752369	1.00[AMR][1000 genomes]
rs73752370	1.00[AMR][1000 genomes]
rs73752371	1.00[AMR][1000 genomes]
rs73752372	1.00[AMR][1000 genomes]
rs73752373	1.00[AMR][1000 genomes]
rs73752374	1.00[AMR][1000 genomes]
rs73752375	1.00[AMR][1000 genomes]
rs73752378	1.00[AMR][1000 genomes]
rs73752379	1.00[AMR][1000 genomes]
rs73752380	1.00[AMR][1000 genomes]
rs73752381	1.00[AMR][1000 genomes]
rs73752382	1.00[AMR][1000 genomes]
rs73752383	1.00[AMR][1000 genomes]
rs73752384	1.00[AMR][1000 genomes]
rs73752385	1.00[AMR][1000 genomes]
rs73752390	1.00[AMR][1000 genomes]
rs73752397	1.00[AMR][1000 genomes]
rs73752399	1.00[AMR][1000 genomes]
rs73753928	1.00[AMR][1000 genomes]
rs7710993	1.00[AMR][1000 genomes]
rs7730859	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1028089	chr5:15636285-15883910	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv537676	chr5:15636285-15883910	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1031483	chr5:15738485-15926083	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv461986	chr5:15854098-15943683	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv597292	chr5:15854098-15943683	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
9	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15851800-15870400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:15855800-15865600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:15861200-15870000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:15863000-15866400	Enhancers	Fetal Heart	heart
5	chr5:15863800-15865800	Enhancers	Brain Hippocampus Middle	brain
6	chr5:15864000-15865400	Weak transcription	Right Ventricle	heart
7	chr5:15864600-15865800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:15864800-15865400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:15864800-15865600	Enhancers	Fetal Stomach	stomach
10	chr5:15864800-15865800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr5:15865000-15865400	Enhancers	Adipose Nuclei	Adipose
12	chr5:15865200-15865400	Enhancers	Aorta	Aorta
13	chr5:15865200-15865400	Enhancers	Fetal Muscle Leg	muscle
14	chr5:15865200-15865400	Enhancers	Ovary	ovary
15	chr5:15865200-15865600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr5:15865200-15865600	Enhancers	Brain Substantia Nigra	brain
17	chr5:15865200-15865800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:15865200-15865800	Enhancers	Left Ventricle	heart
19	chr5:15865200-15865800	Enhancers	Rectal Smooth Muscle	rectum
20	chr5:15865200-15866000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr5:15865200-15866200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links