Variant report

Variant	rs55704539
Chromosome Location	chr5:15914089-15914090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs55762424	1.00[AMR][1000 genomes]
rs55792048	1.00[AMR][1000 genomes]
rs55842606	1.00[AMR][1000 genomes]
rs55900820	1.00[AMR][1000 genomes]
rs56804352	1.00[AMR][1000 genomes]
rs56917287	1.00[AMR][1000 genomes]
rs57018497	1.00[AMR][1000 genomes]
rs57456523	1.00[AMR][1000 genomes]
rs57789337	1.00[AMR][1000 genomes]
rs58172920	1.00[AMR][1000 genomes]
rs58451844	1.00[AMR][1000 genomes]
rs58539280	1.00[AMR][1000 genomes]
rs58700467	1.00[AMR][1000 genomes]
rs59015531	1.00[AMR][1000 genomes]
rs60910436	1.00[AMR][1000 genomes]
rs60964517	1.00[AMR][1000 genomes]
rs61489070	1.00[AMR][1000 genomes]
rs61619084	1.00[AMR][1000 genomes]
rs6861989	1.00[AMR][1000 genomes]
rs6888839	1.00[AMR][1000 genomes]
rs73752328	1.00[AMR][1000 genomes]
rs73752329	1.00[AMR][1000 genomes]
rs73752334	1.00[AMR][1000 genomes]
rs73752337	1.00[AMR][1000 genomes]
rs73752342	1.00[AMR][1000 genomes]
rs73752345	1.00[AMR][1000 genomes]
rs73752347	1.00[AMR][1000 genomes]
rs73752348	1.00[AMR][1000 genomes]
rs73752349	1.00[AMR][1000 genomes]
rs73752350	1.00[AMR][1000 genomes]
rs73752351	1.00[AMR][1000 genomes]
rs73752352	1.00[AMR][1000 genomes]
rs73752353	1.00[AMR][1000 genomes]
rs73752354	1.00[AMR][1000 genomes]
rs73752355	1.00[AMR][1000 genomes]
rs73752356	1.00[AMR][1000 genomes]
rs73752357	1.00[AMR][1000 genomes]
rs73752358	1.00[AMR][1000 genomes]
rs73752359	1.00[AMR][1000 genomes]
rs73752360	1.00[AMR][1000 genomes]
rs73752361	1.00[AMR][1000 genomes]
rs73752362	1.00[AMR][1000 genomes]
rs73752365	1.00[AMR][1000 genomes]
rs73752368	1.00[AMR][1000 genomes]
rs73752369	1.00[AMR][1000 genomes]
rs73752370	1.00[AMR][1000 genomes]
rs73752371	1.00[AMR][1000 genomes]
rs73752372	1.00[AMR][1000 genomes]
rs73752373	1.00[AMR][1000 genomes]
rs73752374	1.00[AMR][1000 genomes]
rs73752375	1.00[AMR][1000 genomes]
rs73752378	1.00[AMR][1000 genomes]
rs73752379	1.00[AMR][1000 genomes]
rs73752380	1.00[AMR][1000 genomes]
rs73752381	1.00[AMR][1000 genomes]
rs73752382	1.00[AMR][1000 genomes]
rs73752383	1.00[AMR][1000 genomes]
rs73752384	1.00[AMR][1000 genomes]
rs73752385	1.00[AMR][1000 genomes]
rs73752390	1.00[AMR][1000 genomes]
rs73752397	1.00[AMR][1000 genomes]
rs73752399	1.00[AMR][1000 genomes]
rs73753928	1.00[AMR][1000 genomes]
rs7710993	1.00[AMR][1000 genomes]
rs7730859	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1031483	chr5:15738485-15926083	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv461986	chr5:15854098-15943683	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv597292	chr5:15854098-15943683	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv427712	chr5:15883439-16055856	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15900200-15915400	Weak transcription	Small Intestine	intestine
2	chr5:15913000-15915600	Enhancers	Fetal Stomach	stomach
3	chr5:15913200-15918400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:15913200-15918600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:15913600-15914200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:15913800-15914200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:15913800-15914200	Enhancers	Adipose Nuclei	Adipose
8	chr5:15913800-15914800	Active TSS	Ovary	ovary
9	chr5:15913800-15915600	Enhancers	Fetal Lung	lung
10	chr5:15913800-15915800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:15913800-15936000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr5:15914000-15914200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:15914000-15914400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:15914000-15914600	Enhancers	Fetal Brain Male	brain
15	chr5:15914000-15914800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:15914000-15915000	Weak transcription	Fetal Heart	heart
17	chr5:15914000-15915200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:15914000-15918400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr5:15914000-15918600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr5:15914000-15918600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr5:15914000-15926800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr5:15914000-15940000	Weak transcription	Colon Smooth Muscle	Colon

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