Variant report

Variant	rs73752390
Chromosome Location	chr5:15938288-15938289
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:15926786..15928687-chr5:15937563..15939757,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs55704539	1.00[AMR][1000 genomes]
rs55762424	1.00[AMR][1000 genomes]
rs55792048	1.00[AMR][1000 genomes]
rs55842606	1.00[AMR][1000 genomes]
rs55900820	1.00[AMR][1000 genomes]
rs56804352	1.00[AMR][1000 genomes]
rs56917287	1.00[AMR][1000 genomes]
rs57018497	1.00[AMR][1000 genomes]
rs57456523	1.00[AMR][1000 genomes]
rs57789337	1.00[AMR][1000 genomes]
rs58172920	1.00[AMR][1000 genomes]
rs58451844	1.00[AMR][1000 genomes]
rs58539280	1.00[AMR][1000 genomes]
rs58700467	1.00[AMR][1000 genomes]
rs59015531	1.00[AMR][1000 genomes]
rs60910436	1.00[AMR][1000 genomes]
rs60964517	1.00[AMR][1000 genomes]
rs61489070	1.00[AMR][1000 genomes]
rs61619084	1.00[AMR][1000 genomes]
rs6861989	1.00[AMR][1000 genomes]
rs6888839	1.00[AMR][1000 genomes]
rs73752328	1.00[AMR][1000 genomes]
rs73752329	1.00[AMR][1000 genomes]
rs73752334	1.00[AMR][1000 genomes]
rs73752337	1.00[AMR][1000 genomes]
rs73752342	1.00[AMR][1000 genomes]
rs73752345	1.00[AMR][1000 genomes]
rs73752347	1.00[AMR][1000 genomes]
rs73752348	1.00[AMR][1000 genomes]
rs73752349	1.00[AMR][1000 genomes]
rs73752350	1.00[AMR][1000 genomes]
rs73752351	1.00[AMR][1000 genomes]
rs73752352	1.00[AMR][1000 genomes]
rs73752353	1.00[AMR][1000 genomes]
rs73752354	1.00[AMR][1000 genomes]
rs73752355	1.00[AMR][1000 genomes]
rs73752356	1.00[AMR][1000 genomes]
rs73752357	1.00[AMR][1000 genomes]
rs73752358	1.00[AMR][1000 genomes]
rs73752359	1.00[AMR][1000 genomes]
rs73752360	1.00[AMR][1000 genomes]
rs73752361	1.00[AMR][1000 genomes]
rs73752362	1.00[AMR][1000 genomes]
rs73752365	1.00[AMR][1000 genomes]
rs73752368	1.00[AMR][1000 genomes]
rs73752369	1.00[AMR][1000 genomes]
rs73752370	1.00[AMR][1000 genomes]
rs73752371	1.00[AMR][1000 genomes]
rs73752372	1.00[AMR][1000 genomes]
rs73752373	1.00[AMR][1000 genomes]
rs73752374	1.00[AMR][1000 genomes]
rs73752375	1.00[AMR][1000 genomes]
rs73752378	1.00[AMR][1000 genomes]
rs73752379	1.00[AMR][1000 genomes]
rs73752380	1.00[AMR][1000 genomes]
rs73752381	1.00[AMR][1000 genomes]
rs73752382	1.00[AMR][1000 genomes]
rs73752383	1.00[AMR][1000 genomes]
rs73752384	1.00[AMR][1000 genomes]
rs73752385	1.00[AMR][1000 genomes]
rs73752397	1.00[AMR][1000 genomes]
rs73752399	1.00[AMR][1000 genomes]
rs73753928	1.00[AMR][1000 genomes]
rs7710993	1.00[AMR][1000 genomes]
rs7730859	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv461986	chr5:15854098-15943683	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv597292	chr5:15854098-15943683	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv427712	chr5:15883439-16055856	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv4735	chr5:15916346-15961432	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15914000-15940000	Weak transcription	Colon Smooth Muscle	Colon
2	chr5:15926800-15939000	Weak transcription	HSMM	muscle
3	chr5:15927000-15938800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr5:15928600-15938400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:15928800-15951400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:15930200-15945600	Weak transcription	Fetal Brain Female	brain
7	chr5:15933800-15942600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:15933800-15943200	Weak transcription	Fetal Kidney	kidney
9	chr5:15934000-15938800	Weak transcription	Osteobl	bone
10	chr5:15934000-15940200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr5:15934000-15940400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:15934000-15943200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:15934000-15943600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr5:15934000-15950800	Weak transcription	Brain Substantia Nigra	brain
15	chr5:15934600-15941200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:15934800-15946400	Strong transcription	Fetal Muscle Leg	muscle
17	chr5:15935600-15939200	Strong transcription	Stomach Smooth Muscle	stomach
18	chr5:15935800-15939200	Strong transcription	Dnd41	blood
19	chr5:15936200-15938400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr5:15936200-15939200	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr5:15936200-15940000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr5:15936200-15942800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr5:15936400-15938800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr5:15936400-15942400	Strong transcription	Fetal Muscle Trunk	muscle
25	chr5:15936600-15938400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr5:15936600-15938600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr5:15936600-15938600	Strong transcription	Brain Cingulate Gyrus	brain
28	chr5:15936600-15939600	Strong transcription	Fetal Lung	lung
29	chr5:15936800-15939200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr5:15936800-15954600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr5:15937000-15938600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr5:15937000-15938800	Strong transcription	Adipose Nuclei	Adipose
33	chr5:15937000-15939200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr5:15937000-15939600	Strong transcription	Aorta	Aorta
35	chr5:15937200-15938400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr5:15937200-15938400	Strong transcription	Brain Inferior Temporal Lobe	brain
37	chr5:15937200-15939800	Weak transcription	Fetal Intestine Small	intestine
38	chr5:15937200-15940200	Weak transcription	Esophagus	oesophagus
39	chr5:15937200-15940200	Strong transcription	Fetal Stomach	stomach
40	chr5:15937200-15942600	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr5:15937400-15939000	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr5:15937400-15939000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr5:15937400-15939200	Strong transcription	Fetal Intestine Large	intestine
44	chr5:15937400-15939600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr5:15937400-15940600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr5:15937800-15938400	Enhancers	Fetal Heart	heart
47	chr5:15937800-15938400	Genic enhancers	Ovary	ovary
48	chr5:15937800-15938600	Strong transcription	Brain Anterior Caudate	brain
49	chr5:15937800-15939600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr5:15938000-15938400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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