Variant report

Variant	rs73752342
Chromosome Location	chr5:15868979-15868980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs55704539	1.00[AMR][1000 genomes]
rs55762424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55792048	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55842606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55900820	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56804352	1.00[AMR][1000 genomes]
rs56917287	1.00[AMR][1000 genomes]
rs57018497	1.00[AMR][1000 genomes]
rs57456523	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57789337	1.00[AMR][1000 genomes]
rs58172920	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58451844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58539280	1.00[AMR][1000 genomes]
rs58700467	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59015531	1.00[AMR][1000 genomes]
rs60716264	1.00[AFR][1000 genomes]
rs60910436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60964517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61489070	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61619084	1.00[AMR][1000 genomes]
rs6861989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6888839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752328	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752329	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752334	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752337	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752349	1.00[AMR][1000 genomes]
rs73752350	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752351	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752352	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752353	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752354	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752355	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752356	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752357	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752358	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752359	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752360	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752361	1.00[AMR][1000 genomes]
rs73752362	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752365	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752368	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752369	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752370	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752371	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752372	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752373	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752374	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752375	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752378	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752379	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752380	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752381	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752382	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73752383	1.00[AMR][1000 genomes]
rs73752384	1.00[AMR][1000 genomes]
rs73752385	1.00[AMR][1000 genomes]
rs73752390	1.00[AMR][1000 genomes]
rs73752397	1.00[AMR][1000 genomes]
rs73752399	1.00[AMR][1000 genomes]
rs73753928	1.00[AMR][1000 genomes]
rs7710993	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7730859	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1028089	chr5:15636285-15883910	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv537676	chr5:15636285-15883910	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1031483	chr5:15738485-15926083	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv461986	chr5:15854098-15943683	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv597292	chr5:15854098-15943683	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15851800-15870400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:15861200-15870000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:15865400-15879400	Weak transcription	Aorta	Aorta
4	chr5:15865600-15869000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:15865600-15885000	Weak transcription	Ovary	ovary
6	chr5:15865800-15869200	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:15865800-15869600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr5:15866000-15869800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:15866200-15869600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:15866200-15870800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:15866400-15872600	Weak transcription	Fetal Heart	heart
12	chr5:15868400-15869000	ZNF genes & repeats	Fetal Muscle Leg	muscle

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