Variant report

Variant	rs6079710
Chromosome Location	chr20:15203893-15203894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17773241	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2025142	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2327916	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs28696952	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2876396	0.94[EUR][1000 genomes]
rs392184	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs393707	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs41420948	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4603847	0.87[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs463275	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56090479	0.96[EUR][1000 genomes]
rs6074854	1.00[CEU][hapmap]
rs6074856	1.00[CEU][hapmap]
rs6079691	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs6079697	1.00[CEU][hapmap]
rs6079702	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6079704	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs6079705	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs6079711	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6110538	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs6110555	1.00[CEU][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7268079	1.00[CEU][hapmap]
rs8126273	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065152	chr20:14781684-15305258	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv585540	chr20:14858910-15242365	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1066220	chr20:14883338-15204628	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1063917	chr20:14939608-15206129	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv912778	chr20:14949763-15207464	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1062252	chr20:14964258-15547739	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv544206	chr20:14964258-15547739	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv524481	chr20:15007730-15382919	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv916795	chr20:15041479-15345528	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv1062960	chr20:15045757-15204628	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1060275	chr20:15084485-15327541	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv526767	chr20:15086277-15223632	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv1058827	chr20:15159151-15289719	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv1066112	chr20:15165512-15206129	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15199200-15205000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:15199800-15205200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr20:15200000-15204600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr20:15200200-15204000	Enhancers	H9 Cell Line	embryonic stem cell
5	chr20:15200200-15204000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr20:15200600-15204000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr20:15200600-15204200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr20:15200800-15204200	Enhancers	HUVEC	blood vessel
9	chr20:15201800-15205600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr20:15202200-15217400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr20:15203200-15204200	Enhancers	Fetal Brain Male	brain
12	chr20:15203400-15204000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr20:15203400-15204200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr20:15203600-15204000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr20:15203600-15204200	Flanking Active TSS	Brain Germinal Matrix	brain
16	chr20:15203800-15204000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr20:15203800-15204000	Flanking Active TSS	Brain Anterior Caudate	brain

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