Variant report

Variant	rs60816862
Chromosome Location	chr10:95860423-95860424
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NOC3L-3	chr10:95859405-95860450	ENSG00000232913.1
2	lnc-NOC3L-3	chr10:95860253-95860450	ENSG00000232913.3
3	lnc-NOC3L-3	chr10:95860253-95860449	ENSG00000232913.1

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs61749239	1.00[EUR][1000 genomes]
rs74151039	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74151041	0.89[AMR][1000 genomes]
rs7912420	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95831400-95864200	Weak transcription	Colonic Mucosa	Colon
2	chr10:95836600-95861400	Weak transcription	Pancreas	Pancrea
3	chr10:95836600-95863400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:95837600-95876000	Weak transcription	Fetal Intestine Large	intestine
5	chr10:95843400-95864000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:95845400-95860600	Weak transcription	Spleen	Spleen
7	chr10:95845400-95867800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:95847800-95860600	Weak transcription	Fetal Intestine Small	intestine
9	chr10:95849000-95862200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:95849000-95862400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:95849200-95863200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr10:95850400-95863400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr10:95853400-95867800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:95853600-95863000	Weak transcription	HSMMtube	muscle
15	chr10:95855000-95861800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:95855200-95862400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:95857800-95860800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:95857800-95860800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:95857800-95862200	Weak transcription	Osteobl	bone
20	chr10:95857800-95863000	Weak transcription	A549	lung
21	chr10:95857800-95875600	Weak transcription	Gastric	stomach
22	chr10:95858400-95861000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr10:95858600-95860600	Enhancers	Fetal Stomach	stomach
24	chr10:95858800-95861400	Weak transcription	Left Ventricle	heart
25	chr10:95858800-95892400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr10:95859000-95861200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:95859000-95861400	Weak transcription	Fetal Muscle Leg	muscle
28	chr10:95859000-95863400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr10:95859000-95863400	Weak transcription	Fetal Brain Female	brain
30	chr10:95859200-95860800	Weak transcription	Ovary	ovary
31	chr10:95859200-95860800	Weak transcription	Right Atrium	heart
32	chr10:95859200-95861400	Weak transcription	Brain Hippocampus Middle	brain
33	chr10:95859200-95861400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr10:95859200-95862400	Weak transcription	Placenta	Placenta
35	chr10:95859200-95863600	Weak transcription	Fetal Heart	heart
36	chr10:95859800-95861800	Weak transcription	Fetal Lung	lung
37	chr10:95860200-95862200	Weak transcription	Aorta	Aorta

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