Variant report

Variant	rs74151041
Chromosome Location	chr10:95863886-95863887
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:95863821-95864438	PANC-1	pancreas:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95840175..95843094-chr10:95862985..95864558,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NOC3L-3	chr10:95863883-95863997	ENSG00000232913.1

Variant related genes	Relation type
ENSG00000231575	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs60816862	0.89[AMR][1000 genomes]
rs74151039	1.00[AMR][1000 genomes]
rs7912420	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95831400-95864200	Weak transcription	Colonic Mucosa	Colon
2	chr10:95837600-95876000	Weak transcription	Fetal Intestine Large	intestine
3	chr10:95843400-95864000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:95845400-95867800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:95853400-95867800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:95857800-95875600	Weak transcription	Gastric	stomach
7	chr10:95858800-95892400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:95860800-95864200	Enhancers	Ovary	ovary
9	chr10:95861000-95867800	Weak transcription	Lung	lung
10	chr10:95861000-95870600	Weak transcription	Spleen	Spleen
11	chr10:95861200-95864000	Weak transcription	Fetal Intestine Small	intestine
12	chr10:95861400-95865400	Enhancers	Fetal Muscle Leg	muscle
13	chr10:95861800-95865600	Enhancers	Fetal Stomach	stomach
14	chr10:95861800-95866400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:95861800-95866800	Weak transcription	Brain Angular Gyrus	brain
16	chr10:95861800-95870600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:95862200-95864600	Enhancers	Osteobl	bone
18	chr10:95862200-95865200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:95862200-95865200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr10:95862400-95864200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:95862400-95864200	Enhancers	Right Atrium	heart
22	chr10:95862400-95866400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:95862600-95864200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:95862600-95864800	Weak transcription	Placenta	Placenta
25	chr10:95862600-95865000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:95862600-95868400	Weak transcription	Brain Hippocampus Middle	brain
27	chr10:95862600-95870600	Weak transcription	Aorta	Aorta
28	chr10:95862600-95881600	Weak transcription	Psoas Muscle	Psoas
29	chr10:95863000-95864200	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr10:95863000-95864200	Enhancers	HSMMtube	muscle
31	chr10:95863000-95864600	Enhancers	A549	lung
32	chr10:95863200-95864000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr10:95863200-95864400	Enhancers	Rectal Smooth Muscle	rectum
34	chr10:95863200-95866200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr10:95863200-95870800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr10:95863400-95864000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr10:95863400-95864200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:95863400-95864200	Enhancers	Fetal Brain Female	brain
39	chr10:95863400-95864200	Enhancers	Left Ventricle	heart
40	chr10:95863400-95864200	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr10:95863400-95864400	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr10:95863400-95864600	Enhancers	Muscle Satellite Cultured Cells	--
43	chr10:95863400-95864600	Enhancers	NHDF-Ad	bronchial
44	chr10:95863400-95865400	Enhancers	NHLF	lung
45	chr10:95863600-95864200	Enhancers	Brain Germinal Matrix	brain
46	chr10:95863600-95864200	Enhancers	Colon Smooth Muscle	Colon
47	chr10:95863600-95864200	Active TSS	Stomach Smooth Muscle	stomach
48	chr10:95863600-95864800	Enhancers	Fetal Heart	heart
49	chr10:95863800-95864000	Enhancers	Fetal Lung	lung
50	chr10:95863800-95864000	Enhancers	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links