Variant report

Variant	rs7912420
Chromosome Location	chr10:95862915-95862916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95836985..95839533-chr10:95861216..95862938,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs60816862	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs74151039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74151041	1.00[AMR][1000 genomes]
rs7911571	1.00[TSI][hapmap]
rs7911889	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95831400-95864200	Weak transcription	Colonic Mucosa	Colon
2	chr10:95836600-95863400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:95837600-95876000	Weak transcription	Fetal Intestine Large	intestine
4	chr10:95843400-95864000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:95845400-95867800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:95849200-95863200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:95850400-95863400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:95853400-95867800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:95853600-95863000	Weak transcription	HSMMtube	muscle
10	chr10:95857800-95863000	Weak transcription	A549	lung
11	chr10:95857800-95875600	Weak transcription	Gastric	stomach
12	chr10:95858800-95892400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:95859000-95863400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:95859000-95863400	Weak transcription	Fetal Brain Female	brain
15	chr10:95859200-95863600	Weak transcription	Fetal Heart	heart
16	chr10:95860800-95864200	Enhancers	Ovary	ovary
17	chr10:95861000-95863400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:95861000-95867800	Weak transcription	Lung	lung
19	chr10:95861000-95870600	Weak transcription	Spleen	Spleen
20	chr10:95861200-95864000	Weak transcription	Fetal Intestine Small	intestine
21	chr10:95861400-95863600	Enhancers	Stomach Smooth Muscle	stomach
22	chr10:95861400-95865400	Enhancers	Fetal Muscle Leg	muscle
23	chr10:95861800-95863600	Weak transcription	Brain Germinal Matrix	brain
24	chr10:95861800-95863600	Enhancers	Fetal Lung	lung
25	chr10:95861800-95865600	Enhancers	Fetal Stomach	stomach
26	chr10:95861800-95866400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr10:95861800-95866800	Weak transcription	Brain Angular Gyrus	brain
28	chr10:95861800-95870600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr10:95862000-95863800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:95862200-95863000	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr10:95862200-95864600	Enhancers	Osteobl	bone
32	chr10:95862200-95865200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:95862200-95865200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr10:95862400-95863200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:95862400-95863200	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr10:95862400-95864200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:95862400-95864200	Enhancers	Right Atrium	heart
38	chr10:95862400-95866400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:95862600-95863400	Weak transcription	Left Ventricle	heart
40	chr10:95862600-95863600	Weak transcription	Colon Smooth Muscle	Colon
41	chr10:95862600-95863800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr10:95862600-95864200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:95862600-95864800	Weak transcription	Placenta	Placenta
44	chr10:95862600-95865000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:95862600-95868400	Weak transcription	Brain Hippocampus Middle	brain
46	chr10:95862600-95870600	Weak transcription	Aorta	Aorta
47	chr10:95862600-95881600	Weak transcription	Psoas Muscle	Psoas
48	chr10:95862800-95863200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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