Variant report

Variant	rs7911571
Chromosome Location	chr10:95878657-95878658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12249709	1.00[CHD][hapmap]
rs12250011	1.00[CHD][hapmap]
rs7071168	1.00[MEX][hapmap]
rs7072252	1.00[MEX][hapmap]
rs74151047	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74151054	1.00[EUR][1000 genomes]
rs74151055	1.00[EUR][1000 genomes]
rs74151056	1.00[EUR][1000 genomes]
rs74151057	1.00[EUR][1000 genomes]
rs74151058	1.00[EUR][1000 genomes]
rs74151060	1.00[EUR][1000 genomes]
rs7911740	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7911889	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7912420	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95858800-95892400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:95862600-95881600	Weak transcription	Psoas Muscle	Psoas
3	chr10:95864200-95891200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:95867600-95882200	Weak transcription	Fetal Stomach	stomach
5	chr10:95871200-95883800	Weak transcription	Spleen	Spleen
6	chr10:95871400-95882000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:95871400-95882200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:95874200-95882400	Weak transcription	HSMM	muscle
9	chr10:95875800-95881800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:95875800-95905600	Weak transcription	Gastric	stomach
11	chr10:95876000-95880600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr10:95876400-95882600	Weak transcription	Colonic Mucosa	Colon
13	chr10:95876800-95881200	Weak transcription	Aorta	Aorta
14	chr10:95877400-95879600	Weak transcription	Fetal Muscle Leg	muscle
15	chr10:95877400-95881400	Weak transcription	Right Atrium	heart
16	chr10:95878000-95878800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:95878400-95879400	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr10:95878600-95880200	Genic enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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