Variant report

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs41291124	1.00[EUR][1000 genomes]
rs57149229	1.00[EUR][1000 genomes]
rs7072252	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs7076847	1.00[EUR][1000 genomes]
rs7082077	1.00[AMR][1000 genomes]
rs7089545	1.00[EUR][1000 genomes]
rs7089906	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs7909098	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7911571	1.00[MEX][hapmap]
rs7911889	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947687	chr10:95827787-95832796	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7071168	GAS1	trans	brain	seeQTL
rs7071168	FOXC1	trans	brain	seeQTL
rs7071168	CYP1B1	trans	brain	seeQTL

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95814400-95836400	Weak transcription	Psoas Muscle	Psoas
2	chr10:95820400-95832800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:95823000-95836400	Weak transcription	Aorta	Aorta
4	chr10:95823200-95830800	Enhancers	Fetal Intestine Small	intestine
5	chr10:95823600-95830400	Enhancers	Fetal Intestine Large	intestine
6	chr10:95825200-95835400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:95825800-95836000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:95825800-95850400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:95827000-95835200	Weak transcription	A549	lung
10	chr10:95827800-95831600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:95829000-95829800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:95829400-95829800	Enhancers	Fetal Brain Male	brain
13	chr10:95829400-95829800	Enhancers	Stomach Mucosa	stomach
14	chr10:95829400-95830000	Enhancers	Fetal Lung	lung
15	chr10:95829400-95830600	Enhancers	Fetal Heart	heart
16	chr10:95829600-95829800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr10:95829600-95829800	Enhancers	HSMMtube	muscle
18	chr10:95829600-95830200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:95829600-95830400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr10:95829600-95830400	Enhancers	Right Ventricle	heart
21	chr10:95829600-95830600	Enhancers	Fetal Muscle Leg	muscle

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