Variant report
Variant | rs6088084 |
---|---|
Chromosome Location | chr20:31647864-31647865 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr20:31641786..31643702-chr20:31645750..31647947,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000186190 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1022676 | 0.87[CEU][hapmap];0.82[CHB][hapmap] |
rs11696307 | 0.87[CHB][hapmap] |
rs11696310 | 0.87[CHB][hapmap] |
rs11699009 | 0.87[CHB][hapmap] |
rs13044428 | 0.93[CHB][hapmap] |
rs1972218 | 0.82[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes] |
rs1998113 | 0.82[CEU][hapmap];0.82[CHB][hapmap];0.85[TSI][hapmap] |
rs2057261 | 0.87[CHB][hapmap] |
rs2057262 | 0.87[CHB][hapmap] |
rs2070319 | 0.87[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];0.88[TSI][hapmap] |
rs2070320 | 0.87[CEU][hapmap];0.82[CHB][hapmap] |
rs2070325 | 0.87[CHB][hapmap] |
rs2073325 | 0.93[CHB][hapmap] |
rs2093067 | 0.86[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes] |
rs221982 | 1.00[JPT][hapmap] |
rs2424936 | 1.00[JPT][hapmap] |
rs2424940 | 0.84[CHB][hapmap] |
rs2424942 | 0.93[CHB][hapmap] |
rs2424945 | 0.93[CHB][hapmap] |
rs2424946 | 0.93[CHB][hapmap] |
rs2424947 | 0.93[CHB][hapmap] |
rs2424953 | 0.87[CHB][hapmap] |
rs2889732 | 0.87[CHB][hapmap] |
rs372054 | 0.92[ASN][1000 genomes] |
rs398444 | 0.93[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes] |
rs4911286 | 0.82[CEU][hapmap];0.82[CHB][hapmap];0.88[TSI][hapmap] |
rs4911287 | 0.87[CEU][hapmap];0.88[TSI][hapmap] |
rs4911290 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4911291 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4911292 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4911293 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4911295 | 0.92[ASN][1000 genomes] |
rs4911296 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs4911297 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6057715 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6057717 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6059052 | 0.81[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rs6059058 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs6059067 | 0.82[ASN][1000 genomes] |
rs6059069 | 1.00[CHB][hapmap];0.82[ASN][1000 genomes] |
rs6059079 | 0.87[CHB][hapmap] |
rs6087440 | 0.82[AMR][1000 genomes] |
rs6088082 | 0.86[CEU][hapmap];0.80[LWK][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap];0.83[EUR][1000 genomes] |
rs6088085 | 0.86[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.97[ASN][1000 genomes] |
rs6088091 | 1.00[CHB][hapmap];0.80[GIH][hapmap];0.82[ASN][1000 genomes] |
rs6141362 | 0.91[CEU][hapmap];0.85[AMR][1000 genomes] |
rs6141871 | 0.82[CHB][hapmap];0.82[ASN][1000 genomes] |
rs6141876 | 0.91[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.84[LWK][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6141877 | 1.00[CHB][hapmap];0.82[ASN][1000 genomes] |
rs761935 | 0.93[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes] |
rs761936 | 0.92[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1056411 | chr20:31057037-31942835 | Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 62 gene(s) | inside rSNPs | diseases |
2 | esv2758519 | chr20:31495807-31748166 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
3 | esv2758792 | chr20:31495807-31748166 | Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
4 | nsv3352 | chr20:31609939-31654756 | Weak transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
5 | nsv912841 | chr20:31617418-31649372 | Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
6 | nsv912842 | chr20:31619922-31651583 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
7 | nsv1062857 | chr20:31620361-31654093 | ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:31643800-31657000 | Weak transcription | Spleen | Spleen |
2 | chr20:31645600-31649000 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
3 | chr20:31645600-31650200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
4 | chr20:31646800-31649600 | Weak transcription | Adipose Nuclei | Adipose |
5 | chr20:31647200-31648000 | Genic enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
6 | chr20:31647400-31649200 | Weak transcription | Esophagus | oesophagus |
7 | chr20:31647600-31648200 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |