Variant report
Variant | rs4911292 |
---|---|
Chromosome Location | chr20:31653736-31653737 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr20:31648171..31652002-chr20:31652342..31655282,4 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1022676 | 0.83[CEU][hapmap];0.82[CHB][hapmap] |
rs11696307 | 0.87[CHB][hapmap] |
rs11696310 | 0.87[CHB][hapmap] |
rs11699009 | 0.87[CHB][hapmap] |
rs13044428 | 0.93[CHB][hapmap];0.80[ASN][1000 genomes] |
rs1972218 | 0.82[CEU][hapmap];0.82[CHB][hapmap];0.80[AMR][1000 genomes] |
rs1998113 | 0.82[CEU][hapmap];0.82[CHB][hapmap] |
rs2057261 | 0.87[CHB][hapmap] |
rs2057262 | 0.87[CHB][hapmap] |
rs2070319 | 0.87[CEU][hapmap];0.82[CHB][hapmap] |
rs2070320 | 0.83[CEU][hapmap];0.82[CHB][hapmap] |
rs2070325 | 0.87[CHB][hapmap] |
rs2073325 | 0.93[CHB][hapmap];0.80[ASN][1000 genomes] |
rs2093067 | 0.86[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes] |
rs221982 | 0.93[JPT][hapmap] |
rs2424936 | 0.93[JPT][hapmap] |
rs2424940 | 0.84[CHB][hapmap];0.82[AFR][1000 genomes] |
rs2424942 | 0.93[CHB][hapmap];0.80[ASN][1000 genomes] |
rs2424945 | 0.93[CHB][hapmap] |
rs2424946 | 0.93[CHB][hapmap] |
rs2424947 | 0.93[CHB][hapmap] |
rs2424953 | 0.88[CHB][hapmap] |
rs2889732 | 0.87[CHB][hapmap] |
rs372054 | 0.93[ASN][1000 genomes] |
rs398444 | 0.93[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes] |
rs4911286 | 0.82[CEU][hapmap];0.82[CHB][hapmap] |
rs4911287 | 0.87[CEU][hapmap] |
rs4911290 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4911291 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4911293 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4911295 | 0.94[ASN][1000 genomes] |
rs4911296 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4911297 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6057715 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6057717 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6059052 | 0.83[AFR][1000 genomes];0.81[AMR][1000 genomes] |
rs6059058 | 0.82[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs6059067 | 0.85[ASN][1000 genomes] |
rs6059069 | 1.00[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.84[ASN][1000 genomes] |
rs6059079 | 0.87[CHB][hapmap] |
rs6087440 | 0.80[AMR][1000 genomes] |
rs6087441 | 0.81[AFR][1000 genomes];0.82[ASN][1000 genomes] |
rs6088082 | 0.86[CEU][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.81[EUR][1000 genomes] |
rs6088084 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6088085 | 0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[ASN][1000 genomes] |
rs6088091 | 1.00[CHB][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.84[ASN][1000 genomes] |
rs6141362 | 0.87[CEU][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs6141871 | 0.82[CHB][hapmap];0.82[ASN][1000 genomes] |
rs6141876 | 0.90[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6141877 | 1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes] |
rs761935 | 0.93[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes] |
rs761936 | 0.92[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1056411 | chr20:31057037-31942835 | Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 62 gene(s) | inside rSNPs | diseases |
2 | esv2758519 | chr20:31495807-31748166 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
3 | esv2758792 | chr20:31495807-31748166 | Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
4 | nsv3352 | chr20:31609939-31654756 | Weak transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
5 | nsv1062857 | chr20:31620361-31654093 | ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:31643800-31657000 | Weak transcription | Spleen | Spleen |
2 | chr20:31650600-31655200 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
3 | chr20:31650800-31658400 | Weak transcription | Right Atrium | heart |
4 | chr20:31651400-31655600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
5 | chr20:31653400-31654000 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
6 | chr20:31653600-31654000 | Bivalent Enhancer | HepG2 | liver |
7 | chr20:31653600-31654200 | Enhancers | NHEK | skin |