Variant report

Variant	rs6087441
Chromosome Location	chr20:31665126-31665127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:31490182..31490889-chr20:31664202..31665129,2	MCF-7	breast:
2	chr20:31533283..31534139-chr20:31664316..31665347,3	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1007285	0.81[ASN][1000 genomes]
rs11696307	0.81[ASN][1000 genomes]
rs11696310	0.81[ASN][1000 genomes]
rs11699009	0.81[ASN][1000 genomes]
rs11699448	0.81[EUR][1000 genomes]
rs13044428	0.92[ASN][1000 genomes]
rs1972199	0.90[ASN][1000 genomes]
rs2057261	0.81[ASN][1000 genomes]
rs2057262	0.81[ASN][1000 genomes]
rs2070321	0.87[ASN][1000 genomes]
rs2070322	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2070324	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2070325	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2073325	0.92[ASN][1000 genomes]
rs2424940	0.87[AFR][1000 genomes]
rs2424942	0.92[ASN][1000 genomes]
rs2424945	0.90[ASN][1000 genomes]
rs2424946	0.90[ASN][1000 genomes]
rs2424947	0.90[ASN][1000 genomes]
rs2424953	0.81[ASN][1000 genomes]
rs2424956	0.82[EUR][1000 genomes]
rs2424957	0.81[EUR][1000 genomes]
rs2424958	0.82[EUR][1000 genomes]
rs2424961	0.82[EUR][1000 genomes]
rs2424963	0.82[EUR][1000 genomes]
rs2889732	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4911290	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4911291	0.82[ASN][1000 genomes]
rs4911292	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4911293	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4911295	0.87[ASN][1000 genomes]
rs4911296	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4911297	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6057715	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6057717	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6059067	0.88[ASN][1000 genomes]
rs6059069	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6059079	0.81[ASN][1000 genomes]
rs6088085	0.82[ASN][1000 genomes]
rs6088091	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6141876	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6141877	0.95[ASN][1000 genomes]
rs7273967	0.81[ASN][1000 genomes]
rs761931	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056411	chr20:31057037-31942835	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv2758519	chr20:31495807-31748166	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758792	chr20:31495807-31748166	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv3454256	chr20:31661938-31665471	Enhancers Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3454255	chr20:31662004-31665410	Bivalent Enhancer Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3454257	chr20:31662065-31665322	Bivalent Enhancer Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3454258	chr20:31662079-31665327	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:31657400-31670600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:31664200-31665200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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