Variant report

Variant	rs2073325
Chromosome Location	chr20:31669990-31669991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1007285	0.81[ASN][1000 genomes]
rs11696307	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11696310	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11697605	1.00[JPT][hapmap]
rs11699009	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11699448	1.00[JPT][hapmap]
rs11700200	1.00[JPT][hapmap];0.83[MEX][hapmap]
rs12625298	0.84[ASN][1000 genomes]
rs13036385	1.00[JPT][hapmap]
rs13039811	1.00[JPT][hapmap];0.83[MEX][hapmap]
rs13041016	1.00[JPT][hapmap]
rs13044428	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547004	1.00[JPT][hapmap];0.87[MEX][hapmap]
rs1972199	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2024934	0.88[CEU][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs2057261	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2057262	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2070321	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2070322	0.87[ASN][1000 genomes]
rs2070324	0.86[ASN][1000 genomes]
rs2070325	0.81[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs2070326	1.00[JPT][hapmap];0.87[MEX][hapmap]
rs2070327	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2070328	0.85[CEU][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[ASN][1000 genomes]
rs2093067	0.93[CHB][hapmap];0.86[GIH][hapmap];0.88[MEX][hapmap];0.82[ASN][1000 genomes]
rs2424940	0.92[JPT][hapmap]
rs2424942	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2424945	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2424946	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2424947	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2424953	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2424955	1.00[JPT][hapmap]
rs2424959	0.82[ASN][1000 genomes]
rs2424962	0.82[ASN][1000 genomes]
rs2424964	0.82[ASN][1000 genomes]
rs2424965	0.81[ASN][1000 genomes]
rs2889732	0.81[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs34388980	0.81[ASN][1000 genomes]
rs35268814	0.81[ASN][1000 genomes]
rs372054	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3926669	0.82[JPT][hapmap]
rs398444	1.00[CHB][hapmap];0.86[GIH][hapmap];0.88[MEX][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4339026	1.00[JPT][hapmap];0.87[MEX][hapmap]
rs4911290	0.93[CHB][hapmap]
rs4911291	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs4911292	0.93[CHB][hapmap];0.80[ASN][1000 genomes]
rs4911293	0.93[CHB][hapmap];0.80[ASN][1000 genomes]
rs4911295	0.85[ASN][1000 genomes]
rs4911296	0.85[ASN][1000 genomes]
rs4911297	0.85[ASN][1000 genomes]
rs6057715	0.93[CHB][hapmap];0.80[ASN][1000 genomes]
rs6057717	0.92[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs6059067	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6059069	0.93[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs6059076	1.00[JPT][hapmap]
rs6059079	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6087441	0.92[ASN][1000 genomes]
rs6088084	0.93[CHB][hapmap]
rs6088085	0.93[CHB][hapmap];0.80[ASN][1000 genomes]
rs6088091	0.93[CHB][hapmap];0.80[CHD][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs6141876	0.93[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs6141877	0.93[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs7265752	1.00[JPT][hapmap]
rs7273967	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs761931	0.81[ASN][1000 genomes]
rs761933	0.84[JPT][hapmap]
rs761935	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs761936	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs761938	1.00[JPT][hapmap];0.87[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056411	chr20:31057037-31942835	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv2758519	chr20:31495807-31748166	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758792	chr20:31495807-31748166	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2073325	DYNLRB1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:31657400-31670600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:31669600-31670600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:31669600-31670800	Enhancers	Adipose Nuclei	Adipose

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