Variant report
Variant | rs11697605 |
---|---|
Chromosome Location | chr20:31661129-31661130 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
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No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11696307 | 1.00[JPT][hapmap] |
rs11696310 | 1.00[JPT][hapmap] |
rs11696835 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs11699009 | 1.00[JPT][hapmap] |
rs11699448 | 1.00[JPT][hapmap] |
rs11700200 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs13036385 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs13036592 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs13039811 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs13041016 | 0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
rs13044139 | 0.87[ASN][1000 genomes] |
rs13044428 | 1.00[JPT][hapmap] |
rs13044703 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1547004 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1972201 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2024934 | 1.00[JPT][hapmap] |
rs2057261 | 1.00[JPT][hapmap] |
rs2057262 | 1.00[JPT][hapmap] |
rs2070323 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2070325 | 0.88[JPT][hapmap] |
rs2070326 | 0.88[CHB][hapmap];1.00[JPT][hapmap] |
rs2070328 | 1.00[JPT][hapmap] |
rs2073325 | 1.00[JPT][hapmap] |
rs221982 | 0.88[CHB][hapmap] |
rs2424936 | 0.88[CHB][hapmap] |
rs2424940 | 0.88[JPT][hapmap];0.83[ASN][1000 genomes] |
rs2424942 | 0.89[JPT][hapmap] |
rs2424945 | 1.00[JPT][hapmap] |
rs2424946 | 0.89[JPT][hapmap] |
rs2424947 | 1.00[JPT][hapmap] |
rs2424949 | 0.84[ASN][1000 genomes] |
rs2424953 | 0.89[JPT][hapmap] |
rs2424955 | 1.00[JPT][hapmap] |
rs2889732 | 0.88[JPT][hapmap] |
rs3926669 | 0.86[CHB][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs4339026 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6059076 | 1.00[JPT][hapmap] |
rs6059079 | 1.00[JPT][hapmap] |
rs6088091 | 0.88[JPT][hapmap] |
rs6141876 | 0.88[JPT][hapmap] |
rs7265752 | 0.88[CHB][hapmap];1.00[JPT][hapmap] |
rs7267265 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs761933 | 0.86[CHB][hapmap];0.86[JPT][hapmap] |
rs761938 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1056411 | chr20:31057037-31942835 | Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 62 gene(s) | inside rSNPs | diseases |
2 | esv2758519 | chr20:31495807-31748166 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
3 | esv2758792 | chr20:31495807-31748166 | Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:31657400-31670600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
2 | chr20:31660000-31661400 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |