Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:31695182..31697161-chr20:31698679..31701622,2	K562	blood:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11696307	0.84[JPT][hapmap]
rs11696310	0.84[JPT][hapmap]
rs11697605	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs11699009	0.84[JPT][hapmap]
rs11699448	0.84[JPT][hapmap]
rs11700200	0.84[JPT][hapmap]
rs13036385	0.84[CEU][hapmap];0.83[JPT][hapmap]
rs13039811	0.81[CEU][hapmap];0.84[JPT][hapmap]
rs13041016	0.95[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13044139	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13044428	0.84[JPT][hapmap]
rs1547004	0.85[CEU][hapmap];0.84[JPT][hapmap]
rs2024934	0.84[JPT][hapmap]
rs2057261	0.84[JPT][hapmap]
rs2057262	0.84[JPT][hapmap]
rs2070326	0.85[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.81[YRI][hapmap]
rs2070328	0.84[JPT][hapmap]
rs2073325	0.84[JPT][hapmap]
rs2424942	0.84[JPT][hapmap]
rs2424945	0.83[JPT][hapmap]
rs2424946	0.84[JPT][hapmap]
rs2424947	0.83[JPT][hapmap]
rs2424953	0.83[JPT][hapmap]
rs2424955	0.84[JPT][hapmap]
rs28461256	0.81[ASN][1000 genomes]
rs3926669	0.83[CEU][hapmap]
rs4339026	0.85[CEU][hapmap];0.84[JPT][hapmap]
rs6059076	0.84[JPT][hapmap]
rs6059079	0.84[JPT][hapmap]
rs7265752	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs761938	0.81[CEU][hapmap];0.84[JPT][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056411	chr20:31057037-31942835	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv2758519	chr20:31495807-31748166	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758792	chr20:31495807-31748166	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1058853	chr20:31696019-31751291	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:31691200-31699000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:31693800-31699000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr20:31694200-31700000	Weak transcription	Pancreas	Pancrea
4	chr20:31695600-31696600	Enhancers	Fetal Muscle Leg	muscle
5	chr20:31696400-31697000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr20:31696400-31697000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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