Variant report
| Variant | rs6059076 |
|---|---|
| Chromosome Location | chr20:31681989-31681990 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs11696307 | 0.81[CHB][hapmap];1.00[JPT][hapmap] |
| rs11696310 | 0.81[CHB][hapmap];1.00[JPT][hapmap] |
| rs11697605 | 1.00[JPT][hapmap] |
| rs11699009 | 0.81[CHB][hapmap];1.00[JPT][hapmap] |
| rs11699448 | 1.00[JPT][hapmap] |
| rs11700200 | 1.00[JPT][hapmap] |
| rs13036385 | 1.00[JPT][hapmap] |
| rs13039811 | 1.00[JPT][hapmap] |
| rs13041016 | 1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs13044139 | 0.80[ASN][1000 genomes] |
| rs13044428 | 1.00[JPT][hapmap] |
| rs1547004 | 1.00[JPT][hapmap] |
| rs2024934 | 1.00[JPT][hapmap] |
| rs2057261 | 0.81[CHB][hapmap];1.00[JPT][hapmap] |
| rs2057262 | 0.81[CHB][hapmap];1.00[JPT][hapmap] |
| rs2070325 | 0.81[CHB][hapmap];0.93[JPT][hapmap] |
| rs2070326 | 1.00[JPT][hapmap] |
| rs2070328 | 1.00[JPT][hapmap] |
| rs2073325 | 1.00[JPT][hapmap] |
| rs2424940 | 0.84[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs2424942 | 0.93[JPT][hapmap] |
| rs2424945 | 1.00[JPT][hapmap] |
| rs2424946 | 0.93[JPT][hapmap] |
| rs2424947 | 1.00[JPT][hapmap] |
| rs2424949 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2424953 | 0.81[CHB][hapmap];0.93[JPT][hapmap] |
| rs2424955 | 1.00[JPT][hapmap] |
| rs28461256 | 0.81[ASN][1000 genomes] |
| rs2889732 | 0.81[CHB][hapmap];0.93[JPT][hapmap] |
| rs3926669 | 0.83[JPT][hapmap] |
| rs4339026 | 1.00[JPT][hapmap] |
| rs6057717 | 0.84[JPT][hapmap] |
| rs6059069 | 0.87[JPT][hapmap] |
| rs6059079 | 0.81[CHB][hapmap];1.00[JPT][hapmap] |
| rs6088091 | 0.93[JPT][hapmap] |
| rs6141876 | 0.93[JPT][hapmap] |
| rs6141877 | 0.87[JPT][hapmap] |
| rs7265752 | 1.00[JPT][hapmap] |
| rs761933 | 0.84[JPT][hapmap] |
| rs761938 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1056411 | chr20:31057037-31942835 | Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 62 gene(s) | inside rSNPs | diseases |
| 2 | esv2758519 | chr20:31495807-31748166 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | esv2758792 | chr20:31495807-31748166 | Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
