Variant report
Variant | rs1972199 |
---|---|
Chromosome Location | chr20:31670161-31670162 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1007285 | 0.82[ASN][1000 genomes] |
rs11696307 | 0.82[ASN][1000 genomes] |
rs11696310 | 0.82[ASN][1000 genomes] |
rs11699009 | 0.82[ASN][1000 genomes] |
rs12625298 | 0.84[ASN][1000 genomes] |
rs13044428 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2057261 | 0.82[ASN][1000 genomes] |
rs2057262 | 0.82[ASN][1000 genomes] |
rs2070321 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2070322 | 0.89[ASN][1000 genomes] |
rs2070324 | 0.88[ASN][1000 genomes] |
rs2070325 | 0.89[ASN][1000 genomes] |
rs2070327 | 0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs2070328 | 0.81[ASN][1000 genomes] |
rs2073325 | 0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2093067 | 0.81[ASN][1000 genomes] |
rs2424942 | 0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2424945 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2424946 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2424947 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2424953 | 0.82[ASN][1000 genomes] |
rs2424959 | 0.82[ASN][1000 genomes] |
rs2424962 | 0.82[ASN][1000 genomes] |
rs2424964 | 0.82[ASN][1000 genomes] |
rs2424965 | 0.81[ASN][1000 genomes] |
rs2889732 | 0.89[ASN][1000 genomes] |
rs34388980 | 0.81[ASN][1000 genomes] |
rs35268814 | 0.81[ASN][1000 genomes] |
rs372054 | 0.83[ASN][1000 genomes] |
rs398444 | 0.83[ASN][1000 genomes] |
rs4911295 | 0.83[ASN][1000 genomes] |
rs4911296 | 0.83[ASN][1000 genomes] |
rs4911297 | 0.83[ASN][1000 genomes] |
rs6057717 | 0.84[ASN][1000 genomes] |
rs6059067 | 0.84[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs6059069 | 0.93[ASN][1000 genomes] |
rs6059079 | 0.82[ASN][1000 genomes] |
rs6087441 | 0.90[ASN][1000 genomes] |
rs6088091 | 0.93[ASN][1000 genomes] |
rs6141876 | 0.87[ASN][1000 genomes] |
rs6141877 | 0.91[ASN][1000 genomes] |
rs7273967 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs761931 | 0.82[ASN][1000 genomes] |
rs761935 | 0.83[ASN][1000 genomes] |
rs761936 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1056411 | chr20:31057037-31942835 | Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 62 gene(s) | inside rSNPs | diseases |
2 | esv2758519 | chr20:31495807-31748166 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
3 | esv2758792 | chr20:31495807-31748166 | Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:31657400-31670600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
2 | chr20:31669600-31670600 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
3 | chr20:31669600-31670800 | Enhancers | Adipose Nuclei | Adipose |