Variant report
| Variant | rs12625298 |
|---|---|
| Chromosome Location | chr20:31679381-31679382 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs1007285 | 0.83[ASN][1000 genomes] |
| rs11696307 | 0.83[ASN][1000 genomes] |
| rs11696310 | 0.83[ASN][1000 genomes] |
| rs11699009 | 0.83[ASN][1000 genomes] |
| rs11699448 | 0.88[ASN][1000 genomes] |
| rs13044428 | 0.84[ASN][1000 genomes] |
| rs1972199 | 0.84[ASN][1000 genomes] |
| rs2057261 | 0.83[ASN][1000 genomes] |
| rs2057262 | 0.83[ASN][1000 genomes] |
| rs2070321 | 0.88[ASN][1000 genomes] |
| rs2070327 | 0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2070328 | 0.87[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2073325 | 0.84[ASN][1000 genomes] |
| rs2424942 | 0.84[ASN][1000 genomes] |
| rs2424945 | 0.85[ASN][1000 genomes] |
| rs2424946 | 0.85[ASN][1000 genomes] |
| rs2424947 | 0.85[ASN][1000 genomes] |
| rs2424953 | 0.83[ASN][1000 genomes] |
| rs2424955 | 0.88[ASN][1000 genomes] |
| rs2424956 | 0.88[ASN][1000 genomes] |
| rs2424957 | 0.88[ASN][1000 genomes] |
| rs2424958 | 0.88[ASN][1000 genomes] |
| rs2424959 | 0.87[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2424960 | 0.84[ASN][1000 genomes] |
| rs2424961 | 0.88[ASN][1000 genomes] |
| rs2424962 | 0.87[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2424963 | 0.88[ASN][1000 genomes] |
| rs2424964 | 0.82[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2424965 | 0.87[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs34388980 | 0.87[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs34868076 | 0.87[ASN][1000 genomes] |
| rs35268814 | 0.87[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6059069 | 0.82[ASN][1000 genomes] |
| rs6059079 | 0.83[ASN][1000 genomes] |
| rs6088091 | 0.82[ASN][1000 genomes] |
| rs7273967 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs761931 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1056411 | chr20:31057037-31942835 | Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 62 gene(s) | inside rSNPs | diseases |
| 2 | esv2758519 | chr20:31495807-31748166 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | esv2758792 | chr20:31495807-31748166 | Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:31678600-31679400 | Enhancers | Fetal Heart | heart |
