Variant report

Variant	rs2070327
Chromosome Location	chr20:31680234-31680235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1007285	0.83[ASN][1000 genomes]
rs11696307	0.83[ASN][1000 genomes]
rs11696310	0.83[ASN][1000 genomes]
rs11699009	0.83[ASN][1000 genomes]
rs11699448	0.88[ASN][1000 genomes]
rs12625298	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13044428	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1972199	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2057261	0.83[ASN][1000 genomes]
rs2057262	0.83[ASN][1000 genomes]
rs2070321	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2070328	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2073325	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2424942	0.84[ASN][1000 genomes]
rs2424945	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2424946	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2424947	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2424953	0.83[ASN][1000 genomes]
rs2424955	0.88[ASN][1000 genomes]
rs2424956	0.88[ASN][1000 genomes]
rs2424957	0.88[ASN][1000 genomes]
rs2424958	0.88[ASN][1000 genomes]
rs2424959	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2424960	0.84[ASN][1000 genomes]
rs2424961	0.88[ASN][1000 genomes]
rs2424962	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2424963	0.88[ASN][1000 genomes]
rs2424964	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2424965	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34388980	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34868076	0.87[ASN][1000 genomes]
rs35268814	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6059069	0.82[ASN][1000 genomes]
rs6059079	0.83[ASN][1000 genomes]
rs6088091	0.82[ASN][1000 genomes]
rs7273967	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs761931	0.83[ASN][1000 genomes]
rs761932	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056411	chr20:31057037-31942835	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv2758519	chr20:31495807-31748166	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758792	chr20:31495807-31748166	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:31680200-31680400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links